Tc05v2_t017530.3

Overview
NameTc05v2_t017530.3
Unique NameTc05v2_t017530.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1458
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productdisease resistance protein At4g27190, transcript variant X2
NoteNB-ARC domain-containing disease resistance protein, putative isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599489
GenbankXM_007029481.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g017530Tc05v2_g017530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p017530.3Tc05v2_p017530.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto288913auto288913Theobroma cacaoexon
exon-auto288914auto288914Theobroma cacaoexon
exon-auto288915auto288915Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto288916auto288916Theobroma cacaoCDS
CDS-auto288917auto288917Theobroma cacaoCDS
CDS-auto288918auto288918Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t017530.3 ID=Tc05v2_t017530.3|Name=Tc05v2_t017530.3|organism=Theobroma cacao|type=mRNA|length=1458bp
ATGAACTTATCGTCTTTGCCTTCATCAATCACTCAACTAGCAAATCTTTG
TACGCTGCACCTTGATAAATGTCTATTAAAAGACATAGCTATTATTGGAG
AGCTGAAGGATTTAGAAATTCTTTCCCTTCAGCGAGCAACAATTGAGGAA
CTACCAGAGGAAATTAAGCAGCTAACCAAGCTAAGGTCTTTGAATTTGAG
TAAGACCAAAATCAAGGCAATTCCACCAAATCTGCTTTCAAGTCTGTCCA
GATTGGAACAGCTATATTTGTGTGAAAGCTTTGTTGAGTGGGAGGTTGAC
GGAGGGAAAAATGCCTGTCTAGTCGAGTTGAAAGATTTGTCATGCCTGAC
AACTCTGGAATTTCAGATTCGTGAAACCAACATTATACCAAAAGACTTGT
TCCATGAAAGGTTGGAAAGATTCAAAATTCTAATTGGAGAAGCATGGAAA
TGGTATGGTTTGTCTATCCCAAGAACGTTGAAACTGAAGCTAAATACAAG
ACTCCTTCAAGATCGTGGGATAAAAATGTTGCTGAAGAAATCCGAGGCTC
TATATCTGAATCTAGATGAACTAGAAGGTGTGAAGAGCCTTCTTTACGAG
TTAGACCATGAAGGTTTTCCAAACCTGAAGTATCTCCATGTCAAAAGTGG
CTCCAACATTGAGTACATTATTCATTCCAAGCAGTGGATTATCTCTAAAG
CATTTCCTGTCTTAGAGTCATTATTTCTGCAGAATTTGACAAATTTGAAG
AAAATTTGCAATGGTCAACTCCCACCAGAATCATTTAGCAGACTAAAAAA
CGTAAAAGTTGCAAGCTGTAAGAAACTGAAGAATTTGTTTTCATTCTCCG
AGGCCAGAGTGCTTCTTCAACTTGAAGAGATTGAAGTGAATGATTGTGAA
AATGTCACAGAGATTATTTCTGAGGAAAAAGCCATTGATGATAGTGAAGC
AATGGACAAACTGGTGTTTCGTCAATTACGGTCCCTGAGACTACAATCTC
TCCCGCAGCTCATTTGCTTCTGCTCTAGAGAGGTTCATCCAAAGACAAGC
AGTACAAGGTCCACATCAGACAAGTCATCTTGTTGCAGTGAAATATTGGA
TGACAATGAAGCAACCAACAAAAGTGTGTCTAGTCTGTCTAGGTCCTTGA
GACTACAGTCTCTCTCAAAGCTTTGCTTCTGCTGTAGAGAGGTTAGCTAT
ATCGAGACAACCAGCACAAGTTCCAGAGATATGACACTGTTGAACCAAAA
GATTTTGTTCCCTAGCAAGGATTTTACATCGTTCCATTGCATTCAAAATT
TGACAAGCTTGGTTATTAGGGATTGTAATTCACCACAACACCTGTTTTCA
GTTTCCGTGGCTACAACTCTAATGCAGCTTAAATTTCTGGAGATAAACAA
ATGTGAAATGATGAGAGCGATATTAGTCACAGAAGAAACGGGGGCAAGTC
ATATATAA
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protein sequence of Tc05v2_p017530.3

>Tc05v2_p017530.3 ID=Tc05v2_p017530.3|Name=Tc05v2_p017530.3|organism=Theobroma cacao|type=polypeptide|length=486bp
MNLSSLPSSITQLANLCTLHLDKCLLKDIAIIGELKDLEILSLQRATIEE
LPEEIKQLTKLRSLNLSKTKIKAIPPNLLSSLSRLEQLYLCESFVEWEVD
GGKNACLVELKDLSCLTTLEFQIRETNIIPKDLFHERLERFKILIGEAWK
WYGLSIPRTLKLKLNTRLLQDRGIKMLLKKSEALYLNLDELEGVKSLLYE
LDHEGFPNLKYLHVKSGSNIEYIIHSKQWIISKAFPVLESLFLQNLTNLK
KICNGQLPPESFSRLKNVKVASCKKLKNLFSFSEARVLLQLEEIEVNDCE
NVTEIISEEKAIDDSEAMDKLVFRQLRSLRLQSLPQLICFCSREVHPKTS
STRSTSDKSSCCSEILDDNEATNKSVSSLSRSLRLQSLSKLCFCCREVSY
IETTSTSSRDMTLLNQKILFPSKDFTSFHCIQNLTSLVIRDCNSPQHLFS
VSVATTLMQLKFLEINKCEMMRAILVTEETGASHI*
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