Tc05v2_t017200.1

Overview
NameTc05v2_t017200.1
Unique NameTc05v2_t017200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length873
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 50% coverage of the annotated genomic feature by RNAseq alignments
Productuncharacterized LOC18599442
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599442
GenbankXM_018121017.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g017200Tc05v2_g017200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p017200.1Tc05v2_p017200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto288229auto288229Theobroma cacaoexon
exon-auto288230auto288230Theobroma cacaoexon
exon-auto288231auto288231Theobroma cacaoexon
exon-auto288232auto288232Theobroma cacaoexon
exon-auto288233auto288233Theobroma cacaoexon
exon-auto288234auto288234Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto288235auto288235Theobroma cacaoCDS
CDS-auto288236auto288236Theobroma cacaoCDS
CDS-auto288237auto288237Theobroma cacaoCDS
CDS-auto288238auto288238Theobroma cacaoCDS
CDS-auto288239auto288239Theobroma cacaoCDS
CDS-auto288240auto288240Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t017200.1 ID=Tc05v2_t017200.1|Name=Tc05v2_t017200.1|organism=Theobroma cacao|type=mRNA|length=873bp
ATGGAGTGGTTACTGTCGGACGACCCAATAGAGACTACCGAATCACATGA
TATCTCCGATTGGCTGATTTTAGTGCGCGGAGCTCGCGTTTCAAGCCCAA
TTAGAGAAGGTCTTAACGTCCACAGTGGCGAGCAACTTCGGCTCTTGACT
AAGAATTTGAGACAAGTAATCAAGCATGAGGTGAAAATGGTGAAGGAAAA
AGAAGAATATCAAATTCTCTACCCGACTCCAATATCATACCATGTGTCGC
CGGAACATATTTCATTAAGCCAAAAGGTTGGCTCATCCGCACAACAAGAA
AAGAAGGAAAAACGAGCCAAGGCAACGTTGGTGGGAAGAAACAACACGTC
TTTCAAGCTTCCCGATGAATGCATTGCTCATGCCATGAAATTTGAGGAGG
AGAAACTCCAAAAGTTAAAAGATCAGAAGGACAAAGTGTGTCAATATTCT
CTTTTTGAGAGATTGGAGGGCTGGCGCATTGATCGAAAGAAGAGGCCCTA
CGGGGTGAACTTTGACATGTACTTTGAACATGAGAAGTCCAAAGCAAAAT
TTAGATCAGTTACTGAAGTTATCAAGTTTATATTGCATGGGGCTTATCCG
AAGAATAAGCAAAATTCAAAGCAAGGCAAATTAGAAGAAAGATCCGGTGG
AAGTAGTTTTGGAGTGAAGCAGACTGTTGGTGCTCTCATCAATGGAGCCA
TTCAAAATCTTTTTAACATAAACGTGGGGAAGAATGCCAATCTTTTGGAT
TTTCTGTTTCAATTACCATCCAAGCAGCCTACCAGGAAATATGGCTCAAT
GATTTGTAGCACACTCTGGGTTTGCTTGGGGCTTCGGGCTTTGCACTTGT
TGGATCCATGTGGGTATTTCTGA
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protein sequence of Tc05v2_p017200.1

>Tc05v2_p017200.1 ID=Tc05v2_p017200.1|Name=Tc05v2_p017200.1|organism=Theobroma cacao|type=polypeptide|length=291bp
MEWLLSDDPIETTESHDISDWLILVRGARVSSPIREGLNVHSGEQLRLLT
KNLRQVIKHEVKMVKEKEEYQILYPTPISYHVSPEHISLSQKVGSSAQQE
KKEKRAKATLVGRNNTSFKLPDECIAHAMKFEEEKLQKLKDQKDKVCQYS
LFERLEGWRIDRKKRPYGVNFDMYFEHEKSKAKFRSVTEVIKFILHGAYP
KNKQNSKQGKLEERSGGSSFGVKQTVGALINGAIQNLFNINVGKNANLLD
FLFQLPSKQPTRKYGSMICSTLWVCLGLRALHLLDPCGYF*
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