Tc05v2_t016570.1

Overview
NameTc05v2_t016570.1
Unique NameTc05v2_t016570.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length657
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
CommentThe sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
Productprobable glutathione S-transferase parA
NoteProbable glutathione S-transferase parA
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599368
GenbankXM_018121346.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g016570Tc05v2_g016570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p016570.1Tc05v2_p016570.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto287048auto287048Theobroma cacaoexon
exon-auto287049auto287049Theobroma cacaoexon
exon-auto287050auto287050Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto287051auto287051Theobroma cacaoCDS
CDS-auto287052auto287052Theobroma cacaoCDS
CDS-auto287053auto287053Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t016570.1 ID=Tc05v2_t016570.1|Name=Tc05v2_t016570.1|organism=Theobroma cacao|type=mRNA|length=657bp
ATGGAAGGTGAAGTTGTTCTACTCGATTTTTGGCCAAGCTCTTTCGCCAT
GAGAGTAAAAATTGCCTTGGCCGAGAAGGGGATAAAATATGAGTGCAAGC
AAGAGGACTTGTTTAACAAGAGTCCTCTACTTCTAGAAATGAACCCAATT
CACAAAAAAATCCCTGTTTTGATCCATAATGGAAAACCCATTTCTGAGTC
TCTCATCATTGTCCAATACATTGATGAAGTTTGGAATCACAAATCGCCTT
TGCTTCCTTCTGATCCTTATCAGCGATCACAGGCCTTGTTTTGGGGAGAC
TATCTTGATAAGAAGATGTACAGCTGTGGAAAGAGAATATGGGTGGGAAA
AGAAGACCAAGAAGAAGCAAAGGAAGAGTTAATGCAAATCTTGAAGACCA
TGGAAGGAGAGCTTGGAGACAAGCTCTACTTTGGAGGAGACAGCATTGGG
TATGTGGACGTTGCACTCGTACCCTTCACCAGCTGGTTTTACACTTACGA
GACATGTGGAAATTTCAGCATAGAGGCAGATTGCCCCAAGCTTATTGCGT
GGGCCAAAAGGTGCAAAGAAAGTGAGAGCGTGTCTAAGGCACTTCCTGAT
CCTCTTGAGATTTATGGTTACTTGTTGCAGCTCAAGAAGAGACTTGGATT
AAATTAG
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protein sequence of Tc05v2_p016570.1

>Tc05v2_p016570.1 ID=Tc05v2_p016570.1|Name=Tc05v2_p016570.1|organism=Theobroma cacao|type=polypeptide|length=219bp
MEGEVVLLDFWPSSFAMRVKIALAEKGIKYECKQEDLFNKSPLLLEMNPI
HKKIPVLIHNGKPISESLIIVQYIDEVWNHKSPLLPSDPYQRSQALFWGD
YLDKKMYSCGKRIWVGKEDQEEAKEELMQILKTMEGELGDKLYFGGDSIG
YVDVALVPFTSWFYTYETCGNFSIEADCPKLIAWAKRCKESESVSKALPD
PLEIYGYLLQLKKRLGLN*
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