Tc05v2_t016160.1

Overview
NameTc05v2_t016160.1
Unique NameTc05v2_t016160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1779
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productriboflavin biosynthesis protein PYRR, chloroplastic
NoteRiboflavin biosynthesis protein PYRR, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599320
GenbankXM_007029246.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g016160Tc05v2_g016160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p016160.1Tc05v2_p016160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto286437auto286437Theobroma cacaoexon
exon-auto286438auto286438Theobroma cacaoexon
exon-auto286439auto286439Theobroma cacaoexon
exon-auto286440auto286440Theobroma cacaoexon
exon-auto286441auto286441Theobroma cacaoexon
exon-auto286442auto286442Theobroma cacaoexon
exon-auto286443auto286443Theobroma cacaoexon
exon-auto286444auto286444Theobroma cacaoexon
exon-auto286445auto286445Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto286446auto286446Theobroma cacaoCDS
CDS-auto286447auto286447Theobroma cacaoCDS
CDS-auto286448auto286448Theobroma cacaoCDS
CDS-auto286449auto286449Theobroma cacaoCDS
CDS-auto286450auto286450Theobroma cacaoCDS
CDS-auto286451auto286451Theobroma cacaoCDS
CDS-auto286452auto286452Theobroma cacaoCDS
CDS-auto286453auto286453Theobroma cacaoCDS
CDS-auto286454auto286454Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t016160.1 ID=Tc05v2_t016160.1|Name=Tc05v2_t016160.1|organism=Theobroma cacao|type=mRNA|length=1779bp
ATGGCGCTCTCTTTTGCACTCGGACCTTACTCATCTTCAGTAATCTGCAG
AACCACCAACATCAACAAACACTCCCACGCCCAAGACTTATCCTACATCC
GACGCGCCGCTGACTTATCCGACAAGTCCGCGGGCTTTACCTCGCCGCAC
CCGAATTTCGGATGCGTCATCGCCACACGCTCAGGTGAGGTGGCCGGTGA
AGGGTACCTGTATGCCCAGGGCACAAAGCCGGCGGAGGGGCTGGCCGTTG
AGGCCGCCGGAGAACGGTGCAGAGGCGCCACTGCTTACCTTAACATGGAG
CCTGGAGATTGCCATGGGGATCACACTGCTGTATCCGCTCTTGTTCAGGC
AGGAATCACAAGAGCTGTTGTTGGAATCAGGCATCCTCTGCAGCATCTGA
GAGGCAATGCCATACGTGCATTAAGGAGTCAAGGTTTGCAGGTTGATGTT
CTTGGAGAGGATATGCAAAGTAAAATTGTGGAGGAAGCTCGAAAGGCATG
TCTCCTTGTCAATTTACCTTTGATTTATAGGGCTGCTTCTCGTGTTCCAT
TTTCTGTTCTTAAGTATGCCATGACCCTTGATGGAAAAACAGCTGCAAGC
AGTGGTCATGCAGCATGGATAAGCAGTAAGTTGTCTAGGAATCGAGTGTT
TGAATTGCGGGGTAGAAGTGATGCCATTATAGTTGGAGGAAATACTATGC
GTAGGGATGACCCAAGACTGACGGCAAGACATGGAGGTGGGCATATGCCA
ATTCGAATAGTAATGTCACAAACGCTTGATCTTCCCAAGGAAGCAAATCT
TTGGGATCTATCTGAGGTGTCCACTATAGTTGTAACACAAAGGGGAGCGA
GGAGGAGTTTCCAGAGATTTCTTGCATCCAAAGGAGTCGAAGTAGTGGAG
TTTGACATCTTAAACCCCAGGGATGTAATGGAATATTTTCATGACCGTGG
GTATCTCTCCATTTTATGGGAGTGTGGAGGGACACTGGCTGCATCTGCTA
TTTCGTCGGGTGTAATACACAAGGTTTTTGCATTTGTTGCTCCTAAAATT
ATTGGTGGGAAGAACGCGCCTTCTCCTGTGGGTGAACTTGGAATGGTTGA
GATGTCACAAGCACTGGATTTGATTGATGTTTGCTTTGAGCAGGTTGGAC
CTGATATGCTTATCAGTGGATTTCTTCAGCCTATACCGGATTTAACACCC
ACTATTCCTTCAGAGGATGAAACCTTTGCAATTGACCCAACTGTTATACC
TTTTGAGTCGAGCATCATATTCTTCTATAAAACATGGGATCCCTATGGTG
CTTTCTCAAATTTTTCTCCTCATCCAATTCAAATGCCCGATGAAGATGGT
AATTATGCCACTTGGTCGAGTGTAGAACATTATTACCAGGCAAACAAGTT
TCTTGGAATCAGCAATCCCATGGCACAGGATTGCATTGAAAAAATAAAAT
TGGCAAAAAGTCCAGAGGAAGCAGCACGAATGGGAAGGTTAACACAGAGG
CGGCACCCTAATCTGGTAAGATCTGATTGGGAAAGTGTCAAGATCGATGT
TATGTACAGGGCACTGAAATGCAAGTTCTCAATATATCCTCACTTGAATT
CCATGCTGCTCTCAACTGCTGGGTCGGTATTAGTTGAAGCTTCACCACAT
GATCTTTTCTGGGGTGGTGGCCGGGACGGTGAAGGCCTGAACTATCTAGG
CCGGCTGCTGATGCAGTTAAGGTCAGAGTTTCTTGGTGAATCACCTGCTG
CAAGTGAAAGCACATGCTTAGCTTTATGA
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protein sequence of Tc05v2_p016160.1

>Tc05v2_p016160.1 ID=Tc05v2_p016160.1|Name=Tc05v2_p016160.1|organism=Theobroma cacao|type=polypeptide|length=593bp
MALSFALGPYSSSVICRTTNINKHSHAQDLSYIRRAADLSDKSAGFTSPH
PNFGCVIATRSGEVAGEGYLYAQGTKPAEGLAVEAAGERCRGATAYLNME
PGDCHGDHTAVSALVQAGITRAVVGIRHPLQHLRGNAIRALRSQGLQVDV
LGEDMQSKIVEEARKACLLVNLPLIYRAASRVPFSVLKYAMTLDGKTAAS
SGHAAWISSKLSRNRVFELRGRSDAIIVGGNTMRRDDPRLTARHGGGHMP
IRIVMSQTLDLPKEANLWDLSEVSTIVVTQRGARRSFQRFLASKGVEVVE
FDILNPRDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKI
IGGKNAPSPVGELGMVEMSQALDLIDVCFEQVGPDMLISGFLQPIPDLTP
TIPSEDETFAIDPTVIPFESSIIFFYKTWDPYGAFSNFSPHPIQMPDEDG
NYATWSSVEHYYQANKFLGISNPMAQDCIEKIKLAKSPEEAARMGRLTQR
RHPNLVRSDWESVKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPH
DLFWGGGRDGEGLNYLGRLLMQLRSEFLGESPAASESTCLAL*
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