Tc05v2_t015540.1

Overview
NameTc05v2_t015540.1
Unique NameTc05v2_t015540.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length432
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productuncharacterized LOC18599244, transcript variant X1
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599244
GenbankXM_007029128.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g015540Tc05v2_g015540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p015540.1Tc05v2_p015540.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto284899auto284899Theobroma cacaoexon
exon-auto284900auto284900Theobroma cacaoexon
exon-auto284901auto284901Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto284902auto284902Theobroma cacaoCDS
CDS-auto284903auto284903Theobroma cacaoCDS
CDS-auto284904auto284904Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t015540.1 ID=Tc05v2_t015540.1|Name=Tc05v2_t015540.1|organism=Theobroma cacao|type=mRNA|length=432bp
ATGTCAAGAGGAGAGTCTGGCTCTGCTATGGCGCTACACAAGAGTAAGAG
GAACTCAGTATCATTTACAGCCGCAAAAGGGCGTTCAACAATATCAGCCC
ACAAGACCAAACAAGAGAAGAAGAAAAGAGGTCCGATGGGAAGCAAAACA
AGGTGCTGCACCTGGGCTGTTGGCAGAAGCCCTAAGAAGTCCTCCCTTGA
GAAAAGGGAGAAGAAGAAAATGAAAGCCCGGGTGACGGAGATGGAAGCGT
TTGTGTCAGACATGAGAACCCAAGTGGACTCCGAAAGACGTTTGCTGCTG
GAAGGAGAAGCAACGGTGGAAGAGTTTAAAGCACTAGTTGCGCAAAAGAG
GGAGGAAAATAAGCTGCACTTTATGATGATTCTACGGGCCGAGCTTCTTG
CTGATCACATTCAGTTCAATATTCTCCCATAG
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protein sequence of Tc05v2_p015540.1

>Tc05v2_p015540.1 ID=Tc05v2_p015540.1|Name=Tc05v2_p015540.1|organism=Theobroma cacao|type=polypeptide|length=144bp
MSRGESGSAMALHKSKRNSVSFTAAKGRSTISAHKTKQEKKKRGPMGSKT
RCCTWAVGRSPKKSSLEKREKKKMKARVTEMEAFVSDMRTQVDSERRLLL
EGEATVEEFKALVAQKREENKLHFMMILRAELLADHIQFNILP*
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