Tc05v2_t014750.1

Overview
NameTc05v2_t014750.1
Unique NameTc05v2_t014750.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length924
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 64 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase SINAT2, transcript variant X3
NoteE3 ubiquitin-protein ligase SINAT2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599138
GenbankXM_018122392.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g014750Tc05v2_g014750Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p014750.1Tc05v2_p014750.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto282945auto282945Theobroma cacaoexon
exon-auto282946auto282946Theobroma cacaoexon
exon-auto282947auto282947Theobroma cacaoexon
exon-auto282948auto282948Theobroma cacaoexon
exon-auto282949auto282949Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto282950auto282950Theobroma cacaoCDS
CDS-auto282951auto282951Theobroma cacaoCDS
CDS-auto282952auto282952Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t014750.1 ID=Tc05v2_t014750.1|Name=Tc05v2_t014750.1|organism=Theobroma cacao|type=mRNA|length=924bp
ATGGCTCCTGGAGGCAGTGCTTGCAAAGAAGTTGTTGAATCTCATCCCTC
TGTAGCAGATTATGACATTGCTACTGCAAAATCCGAGAGTAATACTACAA
TGATGAAGAGTCCTGTTAGTTTGCTTGGAAAACATGGAATTCATTCAAAC
AATGGTGTTTATGAACTCCTTGAGTGTCCTGTATGCACAAATTTGATGTA
CCCACCAATTCACCAGTGCCCAAATGGACATACTCTGTGTTCTAACTGCA
AGATTAGAGTGCACAACTGTTGCCCAACATGCTGCTATGATCTTGGAAAT
ATAAGGTGTTTAGCTTTGGAGAAAGTTGCAGAATCCTTGGAACTCCCTTG
TAAATACCAGAACCTAGGTTGCCATGATATCTTCCCCTATTACAGCAAGC
TCAAGCATGAGCAACACTGTCGGTTTCGTCCCTACAATTGCCCCTATGCT
GGGTCTGAGTGCTCTGTTACAGGTGACATCTCAACCCTTGTGGCACATCT
CAAGGATGATCATAAGGTTGACATGCATGATGGATGTACCTTCAATCATC
GATATGTCAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTT
ACTGTGTTTAATTGTTTTGGAAAACAGTTCTGCTTGCATTTTGAGGCATT
CCAGTTTGGCATGGCACCTGTCTATATGGCCTTTTTACGTTTTATGGGTG
ATGATAATGAAGCAAAAAAGTTCAGTTATAGTTTGGAAGTTGGTGCCAAT
GGCCGTAGACTAATATGGCAGGGGATTCCCAGGAGCATCCGGGACAGTCA
TAGGAAAGTTCGTGACAGCCAGGATGGACTTATTATCCAAAGGAATCTGG
CTCTATACTTTTCTGGTGGGGATAGGCAAGAGCTGAAGTTGAGGGTAACT
GGCCGTATATGGAAAGAAGAATGA
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protein sequence of Tc05v2_p014750.1

>Tc05v2_p014750.1 ID=Tc05v2_p014750.1|Name=Tc05v2_p014750.1|organism=Theobroma cacao|type=polypeptide|length=308bp
MAPGGSACKEVVESHPSVADYDIATAKSESNTTMMKSPVSLLGKHGIHSN
NGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCCYDLGN
IRCLALEKVAESLELPCKYQNLGCHDIFPYYSKLKHEQHCRFRPYNCPYA
GSECSVTGDISTLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWML
TVFNCFGKQFCLHFEAFQFGMAPVYMAFLRFMGDDNEAKKFSYSLEVGAN
GRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVT
GRIWKEE*
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