Tc05v2_t014570.3

Overview
NameTc05v2_t014570.3
Unique NameTc05v2_t014570.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1020
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Product4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic, transcript variant X3
Note4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599118
GenbankXM_018120537.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g014570Tc05v2_g014570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p014570.3Tc05v2_p014570.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto282782auto282782Theobroma cacaoexon
exon-auto282783auto282783Theobroma cacaoexon
exon-auto282784auto282784Theobroma cacaoexon
exon-auto282785auto282785Theobroma cacaoexon
exon-auto282786auto282786Theobroma cacaoexon
exon-auto282787auto282787Theobroma cacaoexon
exon-auto282788auto282788Theobroma cacaoexon
exon-auto282789auto282789Theobroma cacaoexon
exon-auto282790auto282790Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto282791auto282791Theobroma cacaoCDS
CDS-auto282792auto282792Theobroma cacaoCDS
CDS-auto282793auto282793Theobroma cacaoCDS
CDS-auto282794auto282794Theobroma cacaoCDS
CDS-auto282795auto282795Theobroma cacaoCDS
CDS-auto282796auto282796Theobroma cacaoCDS
CDS-auto282797auto282797Theobroma cacaoCDS
CDS-auto282798auto282798Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t014570.3 ID=Tc05v2_t014570.3|Name=Tc05v2_t014570.3|organism=Theobroma cacao|type=mRNA|length=1020bp
ATGGCTTCTCTGCTTAAAGTCTCTGTCAATGGGTTTCGGTCGGAGAAGTT
ACCATCGTTATCTAAAGGCAACAGAAGACAAGGTATTGTTGCAAAGAAAG
CAGCTTTTGGTTCAATCCCAGCGGCAATGTCCTTATCCATGTCTACCACA
GCCGTCCAACATAACCAGAAATCAACTTCCCTGGACCTCGCCATCCCAAT
CATGGTAAATAGTTGTACTGGCAAAATGGGAAAGGCTGTTATCAAAGCAG
CAGATTCTGCTGGACTTCATATTGTTCCTGTGTCTTTTGGTGCTGAGAAG
GAGTCTGGGCAAACTATTGAAATGTGTGGCAAAGAGATTCTGGTCCATGG
TCCTTCTGAAAGAGAAAGCATCCTTGCTTCTGTCTTTCACGAGTATCCAA
ACCTGGTCATGGTAGACTACAGTGTGCCTGCCGCAGTTAATGATAATGCT
GAGCTATATTCCAAAGTTGGAGTGCCTTTTGTTATGGGAACCACTGGTGG
AGACAGGGATCGACTGTATAAGACTGTTGAAGATTCAAATGTTTATGCTG
TGATCTCACCACAAATGGGGAAACAGGTTGTTGCCTTTCTTGCAGCCATG
GAGATCATGGCTGAGCAATTTCCTGGAGCCTTCTCTGGATATTCTCTGCA
GGTGATGGAGTCCCATCAAGCAAGCAAACTGGACACCTCGGGGACTGCTA
AGGCTGTAATATCTTGCTTTCAGAAATTGGGGGTGTCATTTGATATGGAT
CAGATACAAATGATCCGCGATCCCAAGCAGCAGATCGAGATGGTAGGAGT
TCCAGAAGAGCATTTGGCTGGTCATGCTTTTCATTTGTATTGTCTAACAT
CACCTGATGAAACGGTTTCATTTGAGTTTCAGCACAATGTTTGTGGCAGA
TCGATATATGCCGAGGGTACTGTCGATGCTGTACTTTTCCTTGCTAAGAA
GGTTCAGTCAAAGGCCGACAAGCGCATCTACAATATGATTGACGTCTTGC
AGGAAGGTAACATGCGATAA
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protein sequence of Tc05v2_p014570.3

>Tc05v2_p014570.3 ID=Tc05v2_p014570.3|Name=Tc05v2_p014570.3|organism=Theobroma cacao|type=polypeptide|length=340bp
MASLLKVSVNGFRSEKLPSLSKGNRRQGIVAKKAAFGSIPAAMSLSMSTT
AVQHNQKSTSLDLAIPIMVNSCTGKMGKAVIKAADSAGLHIVPVSFGAEK
ESGQTIEMCGKEILVHGPSERESILASVFHEYPNLVMVDYSVPAAVNDNA
ELYSKVGVPFVMGTTGGDRDRLYKTVEDSNVYAVISPQMGKQVVAFLAAM
EIMAEQFPGAFSGYSLQVMESHQASKLDTSGTAKAVISCFQKLGVSFDMD
QIQMIRDPKQQIEMVGVPEEHLAGHAFHLYCLTSPDETVSFEFQHNVCGR
SIYAEGTVDAVLFLAKKVQSKADKRIYNMIDVLQEGNMR*
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