Tc05v2_t014570.1

Overview
NameTc05v2_t014570.1
Unique NameTc05v2_t014570.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1032
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Product4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic, transcript variant X1
Note4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599118
GenbankXM_018120535.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g014570Tc05v2_g014570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p014570.1Tc05v2_p014570.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto282740auto282740Theobroma cacaoexon
exon-auto282741auto282741Theobroma cacaoexon
exon-auto282742auto282742Theobroma cacaoexon
exon-auto282743auto282743Theobroma cacaoexon
exon-auto282744auto282744Theobroma cacaoexon
exon-auto282745auto282745Theobroma cacaoexon
exon-auto282746auto282746Theobroma cacaoexon
exon-auto282747auto282747Theobroma cacaoexon
exon-auto282748auto282748Theobroma cacaoexon
exon-auto282749auto282749Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto282750auto282750Theobroma cacaoCDS
CDS-auto282751auto282751Theobroma cacaoCDS
CDS-auto282752auto282752Theobroma cacaoCDS
CDS-auto282753auto282753Theobroma cacaoCDS
CDS-auto282754auto282754Theobroma cacaoCDS
CDS-auto282755auto282755Theobroma cacaoCDS
CDS-auto282756auto282756Theobroma cacaoCDS
CDS-auto282757auto282757Theobroma cacaoCDS
CDS-auto282758auto282758Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t014570.1 ID=Tc05v2_t014570.1|Name=Tc05v2_t014570.1|organism=Theobroma cacao|type=mRNA|length=1032bp
ATGGCTTCTCTGCTTAAAGTCTCTGTCAATGGGTTTCGGTCGGAGAAGTT
ACCATCGTTATCTAAAGGCAACAGAAGACAAGGTATTGTTGCAAAGAAAG
CAGCTTTTGGTTCAATCCCAGCGGCAATGTCCTTATCCATGTCTACCACA
GCCGTCCAACATAACCAGAAATCAACTTCCCTGGACCTCGCCATCCCAAT
CATGGTAAATAGTTGTACTGGCAAAATGGGAAAGGCTGTTATCAAAGCAG
CAGATTCTGCTGGACTTCATATTGTTCCTGTGTCTTTTGGTGCTGAGAAG
GAGTCTGGGCAAACTATTGAAATGTGTGGCAAAGAGATTCTGGTCCATGG
TCCTTCTGAAAGAGAAAGCATCCTTGCTTCTGTCTTTCACGAGTATCCAA
ACCTGGTCATGGTAGACTACAGTGTGCCTGCCGCAGTTAATGATAATGCT
GAGCTATATTCCAAAGTTGGAGTGCCTTTTGTTATGGGAACCACTGGTGG
AGACAGGGATCGACTGTATAAGACTGTTGAAGATTCAAATGTTTATGCTG
TGATCTCACCACAAATGGGGAAACAGGTTGTTGCCTTTCTTGCAGCCATG
GAGATCATGGCTGAGCAATTTCCTGGAGCCTTCTCTGGATATTCTCTGCA
GGTGATGGAGTCCCATCAAGCAAGCAAACTGGACACCTCGGGGACTGCTA
AGGCTGTAATATCTTGCTTTCAGAAATTGGGGGTGTCATTTGATATGGAT
CAGATACAAATGATCCGCGATCCCAAGCAGCAGATCGAGATGGTAGGAGT
TCCAGAAGAGCATTTGGCTGGTCATGCTTTTCATTTGTATTGTCTAACAT
CACCTGATGAAACGGTTTCATTTGAGTTTCAGCACAATGTTTGTGGCAGA
TCGATATATGCCGAGGGTACTGTCGATGCTGTACTTTTCCTTGCTAAGAA
GGTCCGCTTTGAGGGGATAACTGCCACATGCTCAGCCAATAATAGGTTCA
GTCAAAGGCCGACAAGCGCATCTACAATATGA
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protein sequence of Tc05v2_p014570.1

>Tc05v2_p014570.1 ID=Tc05v2_p014570.1|Name=Tc05v2_p014570.1|organism=Theobroma cacao|type=polypeptide|length=344bp
MASLLKVSVNGFRSEKLPSLSKGNRRQGIVAKKAAFGSIPAAMSLSMSTT
AVQHNQKSTSLDLAIPIMVNSCTGKMGKAVIKAADSAGLHIVPVSFGAEK
ESGQTIEMCGKEILVHGPSERESILASVFHEYPNLVMVDYSVPAAVNDNA
ELYSKVGVPFVMGTTGGDRDRLYKTVEDSNVYAVISPQMGKQVVAFLAAM
EIMAEQFPGAFSGYSLQVMESHQASKLDTSGTAKAVISCFQKLGVSFDMD
QIQMIRDPKQQIEMVGVPEEHLAGHAFHLYCLTSPDETVSFEFQHNVCGR
SIYAEGTVDAVLFLAKKVRFEGITATCSANNRFSQRPTSASTI*
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