Tc05v2_t013610.3

Overview
NameTc05v2_t013610.3
Unique NameTc05v2_t013610.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length822
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productuncharacterized LOC18599001, transcript variant X3
NoteARM repeat superfamily protein, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599001
GenbankXM_007028765.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013610Tc05v2_g013610Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013610.3Tc05v2_p013610.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto280865auto280865Theobroma cacaoexon
exon-auto280866auto280866Theobroma cacaoexon
exon-auto280867auto280867Theobroma cacaoexon
exon-auto280868auto280868Theobroma cacaoexon
exon-auto280869auto280869Theobroma cacaoexon
exon-auto280870auto280870Theobroma cacaoexon
exon-auto280871auto280871Theobroma cacaoexon
exon-auto280872auto280872Theobroma cacaoexon
exon-auto280873auto280873Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto280874auto280874Theobroma cacaoCDS
CDS-auto280875auto280875Theobroma cacaoCDS
CDS-auto280876auto280876Theobroma cacaoCDS
CDS-auto280877auto280877Theobroma cacaoCDS
CDS-auto280878auto280878Theobroma cacaoCDS
CDS-auto280879auto280879Theobroma cacaoCDS
CDS-auto280880auto280880Theobroma cacaoCDS
CDS-auto280881auto280881Theobroma cacaoCDS
CDS-auto280882auto280882Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013610.3 ID=Tc05v2_t013610.3|Name=Tc05v2_t013610.3|organism=Theobroma cacao|type=mRNA|length=822bp
ATGTTATGCTGCAAATCTTTGGGCATCCAAGTACTACACAAGCAACCTGA
TGAGGGGCATGCTGAGAGCAAGGATGATGGTATAGAAACCAGAATGTATT
TCCTGAATTGCTTATGCCTTCTTCTGGGGCGTTTTGATGGGAAAAAATTT
GAAGGCATAGTGGCAGAATATGGAAAGCAGATGTTACATCTCCTTTTATC
AGAGAGAAGGAACGTGTTTGATGTTATATCTGAACTAATTCACATATTGA
CAGATGCAGCACATATAGTTTCTCATTCTACCTGGCAAAATATAGCAAAT
AATTTACTTTTGTGCCTTGGAGATGAAGAAACTGCAATCTGGGAACAAGC
ATCCAATTTGCTTCCTCTGATTGACCCATCGTTTGTGTTGCCTGCATTAG
TTCGTCTTGTTTGCTCGTCAGATGAAAAGATACAACCGGCAGCTGCTGAA
GCCTTTGTCAGAGTGCTCAAGCATCATAATCAGAAACCTGAAGTTGCGTT
CAGGCTGCTTGACAGTCTTAGCAACCTAAGTCAGGGTCTAGCTGATGCAG
AAACTGGAGCACATACAGTGGAAGGATCAAAATTGGACTGTGATAGGGTG
CTCAGACTGATCTTGGAGTGGTTTAAAACTGTTCAAGACTGGAACATCTT
GATTGGACCCCTGATTGACAACATGCTTGCAGAGCCATCAAATGCTAATA
TTGTCTGGCTTCTGAGTCACATAAATGCGCAGTTAGCAGAAGCTGCTGAT
GTAGTCCTTCATCGAGTTTTGTTGCTGATGAAAGGACAGAAAGACATGAT
TGATGAAGCTTTCTTCTCTTGA
back to top

protein sequence of Tc05v2_p013610.3

>Tc05v2_p013610.3 ID=Tc05v2_p013610.3|Name=Tc05v2_p013610.3|organism=Theobroma cacao|type=polypeptide|length=274bp
MLCCKSLGIQVLHKQPDEGHAESKDDGIETRMYFLNCLCLLLGRFDGKKF
EGIVAEYGKQMLHLLLSERRNVFDVISELIHILTDAAHIVSHSTWQNIAN
NLLLCLGDEETAIWEQASNLLPLIDPSFVLPALVRLVCSSDEKIQPAAAE
AFVRVLKHHNQKPEVAFRLLDSLSNLSQGLADAETGAHTVEGSKLDCDRV
LRLILEWFKTVQDWNILIGPLIDNMLAEPSNANIVWLLSHINAQLAEAAD
VVLHRVLLLMKGQKDMIDEAFFS*
back to top