Tc05v2_t013380.1

Overview
NameTc05v2_t013380.1
Unique NameTc05v2_t013380.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1365
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 25 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
Productpolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598975
GenbankXM_018121751.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013380Tc05v2_g013380Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013380.1Tc05v2_p013380.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto280215auto280215Theobroma cacaoexon
exon-auto280216auto280216Theobroma cacaoexon
exon-auto280217auto280217Theobroma cacaoexon
exon-auto280218auto280218Theobroma cacaoexon
exon-auto280219auto280219Theobroma cacaoexon
exon-auto280220auto280220Theobroma cacaoexon
exon-auto280221auto280221Theobroma cacaoexon
exon-auto280222auto280222Theobroma cacaoexon
exon-auto280223auto280223Theobroma cacaoexon
exon-auto280224auto280224Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto280225auto280225Theobroma cacaoCDS
CDS-auto280226auto280226Theobroma cacaoCDS
CDS-auto280227auto280227Theobroma cacaoCDS
CDS-auto280228auto280228Theobroma cacaoCDS
CDS-auto280229auto280229Theobroma cacaoCDS
CDS-auto280230auto280230Theobroma cacaoCDS
CDS-auto280231auto280231Theobroma cacaoCDS
CDS-auto280232auto280232Theobroma cacaoCDS
CDS-auto280233auto280233Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013380.1 ID=Tc05v2_t013380.1|Name=Tc05v2_t013380.1|organism=Theobroma cacao|type=mRNA|length=1365bp
ATGGCTCTACAAATTAGACAATTAATCCAACATTTCATAATCGTTTTCTC
CTTATTCTCACGTTACAACGCCTTGAAAGAGGACCCACGTTATAATTACT
ATAAAGAAGTGGTAGCTGGGTATGATCCGCAAGCATACCCTTCATATGTC
AGCAACCTTGAAGATGGCGAGTTTAAGGACTTGATCAGGCCAAGCGCTGA
AGTTCTTAGCTTGAGCAGGCTTGGTGAAGTGGATATCATCACGTCAACTT
CAACTAAAACAGTTAATGTTGATGATTTTGGAGCTACTGGTGATGGAGAT
GATGACACCCAGGCATTTGAGGAGGCTTGGAAGGAAGCTTGTTCGTCCAA
GGGTACAGTTGTTCTTGAGGTGCCTGAAGGAAAGAGCTATCTTCTTAGGC
CTGTACGATTTTCAGGTCCCTGCAAATCTAATCTTACAATCCAGATATAT
GGAACCATAGAAGCATCTGATGATAGATCAGACTACAAGGAAGATAGCAG
ACACTGGCTTATCTTTGATAGCGTTCATAATTTGCTAGTTGAAGGAGGTG
GGAATATTAATGGCAATGGGAAGATATGGTGGCAGAACTCTTGCAAACTT
AACAAAGATCTTCCATGCAAGGATGCACCAACGGCACTCACCTTCTACAA
AAGCAAAAACTTGGTAGTGAAAGACTTGAACATCCAAGATGCACAAAAAA
TTCATGTTTCGTTCGATAAATGCACCAATGTTCAAGCTTCAAATCTGACG
GTAACAGCACCAGAGAAAAGTCCTAACACTGATGGGATTCATGTTACACA
TACTCAAAACATCCAGATCACTAACTCTGTCATAGGAACAGGTGATGACT
GTATCTCTATTGTGAGTGGATCCCAGAATGTGCAAGCCATGGACATTTCC
TGTGGCCCCGGTCATGGAATCAGTATTGGGAGCTTGGGATCTAGAAATTC
GAGGGCTTATGTTTCAGGAGTGACTGTAGATAGAGCTAAGCTTTCTGGAA
CCACAAATGGAGTCAGGATCAAGACATGGCAGGGAGGGTCAGGAAGTGCA
AGCAACATCAAATTTCAAAACATTGAAATGGTCAATGTGACCAACCCCAT
CATTATAAATCAAAACTACTGTGATCAAGATAAACCATGCAAAGAACAGA
GCTCTGCGGTTCAGGTGAAAAATGTGCTGTACAAGAACATCAAAGGGACT
AGTGCTTCTGAAGTGGCTATAAAATTTGACTGCAGTGAGAGTCATCCTTG
CCAAGGGATTGTGCTACAAAATGTTTACTTACAGGAACAAGGACATGAAA
CTGCCAAAGCTATCTGCAACAATGTTAAATTGAGTGAAGAAGATGTTTTC
CCACAATGCCCTTGA
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protein sequence of Tc05v2_p013380.1

>Tc05v2_p013380.1 ID=Tc05v2_p013380.1|Name=Tc05v2_p013380.1|organism=Theobroma cacao|type=polypeptide|length=455bp
MALQIRQLIQHFIIVFSLFSRYNALKEDPRYNYYKEVVAGYDPQAYPSYV
SNLEDGEFKDLIRPSAEVLSLSRLGEVDIITSTSTKTVNVDDFGATGDGD
DDTQAFEEAWKEACSSKGTVVLEVPEGKSYLLRPVRFSGPCKSNLTIQIY
GTIEASDDRSDYKEDSRHWLIFDSVHNLLVEGGGNINGNGKIWWQNSCKL
NKDLPCKDAPTALTFYKSKNLVVKDLNIQDAQKIHVSFDKCTNVQASNLT
VTAPEKSPNTDGIHVTHTQNIQITNSVIGTGDDCISIVSGSQNVQAMDIS
CGPGHGISIGSLGSRNSRAYVSGVTVDRAKLSGTTNGVRIKTWQGGSGSA
SNIKFQNIEMVNVTNPIIINQNYCDQDKPCKEQSSAVQVKNVLYKNIKGT
SASEVAIKFDCSESHPCQGIVLQNVYLQEQGHETAKAICNNVKLSEEDVF
PQCP*
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