Tc05v2_t013300.1

Overview
NameTc05v2_t013300.1
Unique NameTc05v2_t013300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1599
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
ProductDNA-directed RNA polymerase III subunit 2
NoteDNA-directed RNA polymerase III subunit 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598966
GenbankXM_018120981.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013300Tc05v2_g013300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013300.1Tc05v2_p013300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto279913auto279913Theobroma cacaoexon
exon-auto279914auto279914Theobroma cacaoexon
exon-auto279915auto279915Theobroma cacaoexon
exon-auto279916auto279916Theobroma cacaoexon
exon-auto279917auto279917Theobroma cacaoexon
exon-auto279918auto279918Theobroma cacaoexon
exon-auto279919auto279919Theobroma cacaoexon
exon-auto279920auto279920Theobroma cacaoexon
exon-auto279921auto279921Theobroma cacaoexon
exon-auto279922auto279922Theobroma cacaoexon
exon-auto279923auto279923Theobroma cacaoexon
exon-auto279924auto279924Theobroma cacaoexon
exon-auto279925auto279925Theobroma cacaoexon
exon-auto279926auto279926Theobroma cacaoexon
exon-auto279927auto279927Theobroma cacaoexon
exon-auto279928auto279928Theobroma cacaoexon
exon-auto279929auto279929Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto279930auto279930Theobroma cacaoCDS
CDS-auto279931auto279931Theobroma cacaoCDS
CDS-auto279932auto279932Theobroma cacaoCDS
CDS-auto279933auto279933Theobroma cacaoCDS
CDS-auto279934auto279934Theobroma cacaoCDS
CDS-auto279935auto279935Theobroma cacaoCDS
CDS-auto279936auto279936Theobroma cacaoCDS
CDS-auto279937auto279937Theobroma cacaoCDS
CDS-auto279938auto279938Theobroma cacaoCDS
CDS-auto279939auto279939Theobroma cacaoCDS
CDS-auto279940auto279940Theobroma cacaoCDS
CDS-auto279941auto279941Theobroma cacaoCDS
CDS-auto279942auto279942Theobroma cacaoCDS
CDS-auto279943auto279943Theobroma cacaoCDS
CDS-auto279944auto279944Theobroma cacaoCDS
CDS-auto279945auto279945Theobroma cacaoCDS
CDS-auto279946auto279946Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013300.1 ID=Tc05v2_t013300.1|Name=Tc05v2_t013300.1|organism=Theobroma cacao|type=mRNA|length=1599bp
ATGGTGGGAATACCAGATGGAATTCATACTTTCCAAGACTTTGTTCGTGG
AGGGTTGATTGAGTATCTTGATGTTAATGAACAGAACAATGCCCTGATTG
CATTATATGAGGGAGAGGCCACATCTGAAACAACCCATATTGAGATAGAG
CCTTTCACCATCTTAGGCGTCTGTGCTGGGTTAATTCCATATCCTCATCA
TAATCAGTCACCAAGAAATACCTATCAGTGTGCTATGGGTAAGCAAGCTA
TGGGAAGCATTGCATACAACCAGTTTTCTCGAATGGACTCCGTACTTTAC
CTGTTGCTTTATCCTCAACGGCCTTTATTGACAACAAGGACAATTGAGCT
GGTTGGATATGATAAGCTTGGAGCTGGTCAGAATGCTACTGTTGCTGTGA
TGAGTTATAGTGGCTATGATATAGAGGATGCTATTGTGATGAACAAGTCA
TCTCTGGATCGTGGGTTTGGTCGTTGTATTGTCATGAAGAGTTACACTGC
CATTTATCAGAAGAATTATGAGAACGGTACATCAGATAGAGTACTTAGGC
CACAAAGAACAGGACCTGGTTCAGAAAGGATGCAGATACTGGATGATTAT
GGACTTGCTGCTCCTGGGGAGATAATTAAGCCAAATGACATCTATATCAA
TAAGGAATCTCCTATTCATACCACAGGGCAACGTGTCCCCGCAGATGGAC
AGCAAGATATTGCATATAAACCTGCTAAACAAACATTTAAAGGTCCCGAG
GGAGAGTCTTGTGTGGTAGATAGAGTTGCCTTTTGCTCTGATAAGAGTGA
GAATTTATGTATCAAGTTTATAATTCGCCATACACGTAGACCGGAGGTTG
GTGACAAATTTAGTAGCAGACATGGGCAGAAAGGTGTTTGTGGCACCATC
ATTCAACAGGAAGATTTCCCATTTTCTGAAACTGGCATCTGTCCTGATTT
AATCATGAATCCTCATGGTTTTCCAAGTCGGATGACAATAGGTAAGATGA
TAGAGCTTCTTGGGGGTAAAGCTGGAGTTTCGTGTGGTAGGTTTTATTAT
GGAAGTGCCTTTGGAGAAGCAAGTGGTCATGCAGACAGGGTTGAAGCTAT
AAGTGAAACACTTGTGAAGCGTGGTTTTAGCTACAACGGCAAGGACTTCC
TTTACTCAGGTATCACAGGTTGCCCACTACAAGCATATATCTTCATGGGG
CCAATTTACTACCAGAAATTAAAACATATGGTTCTGGATAAAATCCAAGC
CAGAGGCAGTGGGCCCCGAGTTATGCTAACTAGGCAGCCTACTGAAGGCA
GAGCCCGAAATGGAGGACTGCGTGTTGGAGAAATGGAACGTGATTGCCTG
ATTTCTTATGGAGCTAGCCTGTTGATTTTTGAGCGCCTAATGATCTCTAG
TGATCCTTTGGAAGTTCAGGTTTGTAGAAAGTGTGGTTTGTTAGGATATT
TCAGTCATAAGCTGAAAAGAGGGATTTGTTCTTCCTGTAGTAATGGAGAT
AATATCTCTATGATTAAGTTGCCATATGCTTGCAAGCTCTTATTTCAGGA
ACTGCAATCAATGAACATTGTTCCTCGCATCAATTTAGCAGAACCATAA
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protein sequence of Tc05v2_p013300.1

>Tc05v2_p013300.1 ID=Tc05v2_p013300.1|Name=Tc05v2_p013300.1|organism=Theobroma cacao|type=polypeptide|length=533bp
MVGIPDGIHTFQDFVRGGLIEYLDVNEQNNALIALYEGEATSETTHIEIE
PFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGSIAYNQFSRMDSVLY
LLLYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS
SLDRGFGRCIVMKSYTAIYQKNYENGTSDRVLRPQRTGPGSERMQILDDY
GLAAPGEIIKPNDIYINKESPIHTTGQRVPADGQQDIAYKPAKQTFKGPE
GESCVVDRVAFCSDKSENLCIKFIIRHTRRPEVGDKFSSRHGQKGVCGTI
IQQEDFPFSETGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFYY
GSAFGEASGHADRVEAISETLVKRGFSYNGKDFLYSGITGCPLQAYIFMG
PIYYQKLKHMVLDKIQARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL
ISYGASLLIFERLMISSDPLEVQVCRKCGLLGYFSHKLKRGICSSCSNGD
NISMIKLPYACKLLFQELQSMNIVPRINLAEP*
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