Tc05v2_t013280.1

Overview
NameTc05v2_t013280.1
Unique NameTc05v2_t013280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1113
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
Productpolyadenylation and cleavage factor homolog 4
NotePutative Polyadenylation and cleavage factor homolog 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598963
GenbankXM_018120978.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013280Tc05v2_g013280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013280.1Tc05v2_p013280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto279901auto279901Theobroma cacaoexon
exon-auto279902auto279902Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto279903auto279903Theobroma cacaoCDS
CDS-auto279904auto279904Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013280.1 ID=Tc05v2_t013280.1|Name=Tc05v2_t013280.1|organism=Theobroma cacao|type=mRNA|length=1113bp
ATGGCTCCCGAAGTTTTGCCTCCTCCAGGGAAACGACCCAGGATTGTTGC
TCCTATCCCTGATTTCATTCCCAGTTTCACCAACATCTCACGATCCCCGA
ACCAACCTATACCATATTTTCATTATCAGAATCGCGGCCGTATTCCCTCT
CCATCGCCTCACTCGTTTCATCCAATGCAGCATCAACAAGGCCAGGGTTT
CATGGTAAACAACCCTAACCCAGGAGTTAACCTAGTACTTCCTCCTACGA
TGGTCAAGCCTGTCACGGTTCAAGATTTCCAGCTTCAACATCAAAAAGAG
CAGGGTTTTGCTGTTAAGAACCCTAGCGGGGGTGTTTTTTCTGCAACAAC
AGTCAAGCCGGTTCAAGTTCATGGCTTGAATCTACATCAAGCACCGATTT
CCTGTCTGCTTAAGCCTTACGCTACCATGAGTGTGGTTCCTGAAAGGTCC
ATGCCAATCGAGAATACTCCTCCAGGACCTCGACCTGTTGCTCCGGGTTC
GTCTCAACTTAGCTTTCCTCAATTGTCGAGTGCTGTACTGTCGGAGTTGC
TTAACTCTGTCGGGGCACAAGCATTAGCCAAGCCTAACGAAGAAACGCCC
GTAAAGGATGCCGTTCCCCTGGAGTTTGATGCACATTGGCTTAAGGTGCG
CCATGAATCGGTGATTAGATCCTTGTATTCTGATTTCCCCCGACAATGTC
AAACTTGTGGACAAAGGTTCAAGACCCAGGAAAATCATAGCAAACACATG
GATTGGCATGTCAGAAAAAACAGAGAAATTAAGAAGAAAAAGGTTAAACC
TTCTCGACAATGGCTCTTGACTGAGAGTCAATGGCTTGGGTGTGCTGCAG
CCCTGACTGACACTGACAATATGAAAACCGATGAAGAATTGGCTGTTGGG
GCTGACGAAGATCAGAGAGTATGTGCATTGTGCATGGAGGCTTTTGAGGA
TTTTTACAGTGATGAGACTGAAGATTGGATGTACAAAGGAGCTGTTTACA
TGAGGGCACCTAATGGATCAATGTCTGCAGGCAAAGATCGATCTCAGCTA
GGTCCAATAGTTCATGCTAAGTGCCTGCCACAGACAGGAAAAATTTTAAA
CAACATAGGGTAG
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protein sequence of Tc05v2_p013280.1

>Tc05v2_p013280.1 ID=Tc05v2_p013280.1|Name=Tc05v2_p013280.1|organism=Theobroma cacao|type=polypeptide|length=371bp
MAPEVLPPPGKRPRIVAPIPDFIPSFTNISRSPNQPIPYFHYQNRGRIPS
PSPHSFHPMQHQQGQGFMVNNPNPGVNLVLPPTMVKPVTVQDFQLQHQKE
QGFAVKNPSGGVFSATTVKPVQVHGLNLHQAPISCLLKPYATMSVVPERS
MPIENTPPGPRPVAPGSSQLSFPQLSSAVLSELLNSVGAQALAKPNEETP
VKDAVPLEFDAHWLKVRHESVIRSLYSDFPRQCQTCGQRFKTQENHSKHM
DWHVRKNREIKKKKVKPSRQWLLTESQWLGCAAALTDTDNMKTDEELAVG
ADEDQRVCALCMEAFEDFYSDETEDWMYKGAVYMRAPNGSMSAGKDRSQL
GPIVHAKCLPQTGKILNNIG*
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