Tc05v2_t013230.2

Overview
NameTc05v2_t013230.2
Unique NameTc05v2_t013230.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1032
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productcycloartenol-C-24-methyltransferase, transcript variant X2
NoteCycloartenol-C-24-methyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598956
GenbankXM_007028702.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013230Tc05v2_g013230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013230.2Tc05v2_p013230.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto279742auto279742Theobroma cacaoexon
exon-auto279743auto279743Theobroma cacaoexon
exon-auto279744auto279744Theobroma cacaoexon
exon-auto279745auto279745Theobroma cacaoexon
exon-auto279746auto279746Theobroma cacaoexon
exon-auto279747auto279747Theobroma cacaoexon
exon-auto279748auto279748Theobroma cacaoexon
exon-auto279749auto279749Theobroma cacaoexon
exon-auto279750auto279750Theobroma cacaoexon
exon-auto279751auto279751Theobroma cacaoexon
exon-auto279752auto279752Theobroma cacaoexon
exon-auto279753auto279753Theobroma cacaoexon
exon-auto279754auto279754Theobroma cacaoexon
exon-auto279755auto279755Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto279756auto279756Theobroma cacaoCDS
CDS-auto279757auto279757Theobroma cacaoCDS
CDS-auto279758auto279758Theobroma cacaoCDS
CDS-auto279759auto279759Theobroma cacaoCDS
CDS-auto279760auto279760Theobroma cacaoCDS
CDS-auto279761auto279761Theobroma cacaoCDS
CDS-auto279762auto279762Theobroma cacaoCDS
CDS-auto279763auto279763Theobroma cacaoCDS
CDS-auto279764auto279764Theobroma cacaoCDS
CDS-auto279765auto279765Theobroma cacaoCDS
CDS-auto279766auto279766Theobroma cacaoCDS
CDS-auto279767auto279767Theobroma cacaoCDS
CDS-auto279768auto279768Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013230.2 ID=Tc05v2_t013230.2|Name=Tc05v2_t013230.2|organism=Theobroma cacao|type=mRNA|length=1032bp
ATGTCAAAATCTGGAGCATTGGATCTTGTTTCTGGGGTTGGTGGAAGCAT
TGAGAGAAAGGAAGTATTCTCGGCTGTTCAAAAGTATGAAAAGTATCATG
TTTGTCATGGAGGAGATGATGAAGAGAGGAAAGCTAACTACACAGATATG
GTTAACAATTATTATGATCTTGTGACAAGTTTTTATGAATATGGTTGGGG
TGAATCTTTCCATTTTGCACCAAGATGGAAAGGGGAATCACTTCGAGAGA
GCATCAAGAGGCATGAACACTTTCTTGCTTTGCAACTTGGTTTGAAGAAA
GGGCAGAAGGTATTAGATGTGGGCTGTGGAATTGGTGGGCCACTAAGAGA
AATTGCTAGATTTAGTGATACATTGCTTACAGGGTTAAACAACAATGAAT
ATCAAATATCAAGAGGAGAGGAACTGAATCGCATCAGAGGAGTTGACAAT
AGTTGCACTTATGTGAAGGCTGACTTCATGAGGATGCCTTTCTCTGACAG
TACTTTTGATGCAATATTTGCCATAGAAGCCACTTGTCATGCACCCGATC
TGCTTAATTGCTACAAAGAAATATACAGAGTGTTGAAACCTGGCCAGTGC
TTTGCTGCTTATGAATGGTGCGTTACCAATTCATTTGATCCCATGAACCA
AGAGCATCAAAGAATTAAGGGTGAAGTTGAACTGGGAAATGGACTTCCTG
ACATCAGATCAATGGGACAGTGTCTAGAAGCTCTGAAACTTGCTGGATTT
GAGGTCATATGTGAGAAAGATGTTGCTGTGGACTCACCTCTCCCTTGGCA
CTTACCCCTGGATAAAGATTATTTCTCACCAAGTAACTTCCGAGTTACAG
CTTTTGGACGTTTTGTCACTAGAAATATGGTCAAAATATTGGAGTTTTTG
GGACTTGCTCCAGAAGGTAGTCAAAGAGTACAGCATTTTCTAGAGAAAGC
AGCAGATGCTCTTGTTGAAGGTGGAAGGAAGGGGATCTTCACGCCAATGT
ATTTCTTCTTGGCTCGCAAACCCATCCCCTGA
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protein sequence of Tc05v2_p013230.2

>Tc05v2_p013230.2 ID=Tc05v2_p013230.2|Name=Tc05v2_p013230.2|organism=Theobroma cacao|type=polypeptide|length=344bp
MSKSGALDLVSGVGGSIERKEVFSAVQKYEKYHVCHGGDDEERKANYTDM
VNNYYDLVTSFYEYGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKK
GQKVLDVGCGIGGPLREIARFSDTLLTGLNNNEYQISRGEELNRIRGVDN
SCTYVKADFMRMPFSDSTFDAIFAIEATCHAPDLLNCYKEIYRVLKPGQC
FAAYEWCVTNSFDPMNQEHQRIKGEVELGNGLPDIRSMGQCLEALKLAGF
EVICEKDVAVDSPLPWHLPLDKDYFSPSNFRVTAFGRFVTRNMVKILEFL
GLAPEGSQRVQHFLEKAADALVEGGRKGIFTPMYFFLARKPIP*
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