Tc05v2_t013230.1

Overview
NameTc05v2_t013230.1
Unique NameTc05v2_t013230.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1032
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productcycloartenol-C-24-methyltransferase, transcript variant X4
NoteCycloartenol-C-24-methyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598956
GenbankXM_018122435.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g013230Tc05v2_g013230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p013230.1Tc05v2_p013230.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto279713auto279713Theobroma cacaoexon
exon-auto279714auto279714Theobroma cacaoexon
exon-auto279715auto279715Theobroma cacaoexon
exon-auto279716auto279716Theobroma cacaoexon
exon-auto279717auto279717Theobroma cacaoexon
exon-auto279718auto279718Theobroma cacaoexon
exon-auto279719auto279719Theobroma cacaoexon
exon-auto279720auto279720Theobroma cacaoexon
exon-auto279721auto279721Theobroma cacaoexon
exon-auto279722auto279722Theobroma cacaoexon
exon-auto279723auto279723Theobroma cacaoexon
exon-auto279724auto279724Theobroma cacaoexon
exon-auto279725auto279725Theobroma cacaoexon
exon-auto279726auto279726Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto279727auto279727Theobroma cacaoCDS
CDS-auto279728auto279728Theobroma cacaoCDS
CDS-auto279729auto279729Theobroma cacaoCDS
CDS-auto279730auto279730Theobroma cacaoCDS
CDS-auto279731auto279731Theobroma cacaoCDS
CDS-auto279732auto279732Theobroma cacaoCDS
CDS-auto279733auto279733Theobroma cacaoCDS
CDS-auto279734auto279734Theobroma cacaoCDS
CDS-auto279735auto279735Theobroma cacaoCDS
CDS-auto279736auto279736Theobroma cacaoCDS
CDS-auto279737auto279737Theobroma cacaoCDS
CDS-auto279738auto279738Theobroma cacaoCDS
CDS-auto279739auto279739Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t013230.1 ID=Tc05v2_t013230.1|Name=Tc05v2_t013230.1|organism=Theobroma cacao|type=mRNA|length=1032bp
ATGTCAAAATCTGGAGCATTGGATCTTGTTTCTGGGGTTGGTGGAAGCAT
TGAGAGAAAGGAAGTATTCTCGGCTGTTCAAAAGTATGAAAAGTATCATG
TTTGTCATGGAGGAGATGATGAAGAGAGGAAAGCTAACTACACAGATATG
GTTAACAATTATTATGATCTTGTGACAAGTTTTTATGAATATGGTTGGGG
TGAATCTTTCCATTTTGCACCAAGATGGAAAGGGGAATCACTTCGAGAGA
GCATCAAGAGGCATGAACACTTTCTTGCTTTGCAACTTGGTTTGAAGAAA
GGGCAGAAGGTATTAGATGTGGGCTGTGGAATTGGTGGGCCACTAAGAGA
AATTGCTAGATTTAGTGATACATTGCTTACAGGGTTAAACAACAATGAAT
ATCAAATATCAAGAGGAGAGGAACTGAATCGCATCAGAGGAGTTGACAAT
AGTTGCACTTATGTGAAGGCTGACTTCATGAGGATGCCTTTCTCTGACAG
TACTTTTGATGCAATATTTGCCATAGAAGCCACTTGTCATGCACCCGATC
TGCTTAATTGCTACAAAGAAATATACAGAGTGTTGAAACCTGGCCAGTGC
TTTGCTGCTTATGAATGGTGCGTTACCAATTCATTTGATCCCATGAACCA
AGAGCATCAAAGAATTAAGGGTGAAGTTGAACTGGGAAATGGACTTCCTG
ACATCAGATCAATGGGACAGTGTCTAGAAGCTCTGAAACTTGCTGGATTT
GAGGTCATATGTGAGAAAGATGTTGCTGTGGACTCACCTCTCCCTTGGCA
CTTACCCCTGGATAAAGATTATTTCTCACCAAGTAACTTCCGAGTTACAG
CTTTTGGACGTTTTGTCACTAGAAATATGGTCAAAATATTGGAGTTTTTG
GGACTTGCTCCAGAAGGTAGTCAAAGAGTACAGCATTTTCTAGAGAAAGC
AGCAGATGCTCTTGTTGAAGGTGGAAGGAAGGGGATCTTCACGCCAATGT
ATTTCTTCTTGGCTCGCAAACCCATCCCCTGA
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protein sequence of Tc05v2_p013230.1

>Tc05v2_p013230.1 ID=Tc05v2_p013230.1|Name=Tc05v2_p013230.1|organism=Theobroma cacao|type=polypeptide|length=344bp
MSKSGALDLVSGVGGSIERKEVFSAVQKYEKYHVCHGGDDEERKANYTDM
VNNYYDLVTSFYEYGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKK
GQKVLDVGCGIGGPLREIARFSDTLLTGLNNNEYQISRGEELNRIRGVDN
SCTYVKADFMRMPFSDSTFDAIFAIEATCHAPDLLNCYKEIYRVLKPGQC
FAAYEWCVTNSFDPMNQEHQRIKGEVELGNGLPDIRSMGQCLEALKLAGF
EVICEKDVAVDSPLPWHLPLDKDYFSPSNFRVTAFGRFVTRNMVKILEFL
GLAPEGSQRVQHFLEKAADALVEGGRKGIFTPMYFFLARKPIP*
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