Tc05v2_t012880.2

Overview
NameTc05v2_t012880.2
Unique NameTc05v2_t012880.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1563
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productthioredoxin reductase NTRC, transcript variant X1
NoteNADPH-dependent thioredoxin reductase 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598885
GenbankXM_018121664.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g012880Tc05v2_g012880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p012880.2Tc05v2_p012880.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto278576auto278576Theobroma cacaoexon
exon-auto278577auto278577Theobroma cacaoexon
exon-auto278578auto278578Theobroma cacaoexon
exon-auto278579auto278579Theobroma cacaoexon
exon-auto278580auto278580Theobroma cacaoexon
exon-auto278581auto278581Theobroma cacaoexon
exon-auto278582auto278582Theobroma cacaoexon
exon-auto278583auto278583Theobroma cacaoexon
exon-auto278584auto278584Theobroma cacaoexon
exon-auto278585auto278585Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto278586auto278586Theobroma cacaoCDS
CDS-auto278587auto278587Theobroma cacaoCDS
CDS-auto278588auto278588Theobroma cacaoCDS
CDS-auto278589auto278589Theobroma cacaoCDS
CDS-auto278590auto278590Theobroma cacaoCDS
CDS-auto278591auto278591Theobroma cacaoCDS
CDS-auto278592auto278592Theobroma cacaoCDS
CDS-auto278593auto278593Theobroma cacaoCDS
CDS-auto278594auto278594Theobroma cacaoCDS
CDS-auto278595auto278595Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t012880.2 ID=Tc05v2_t012880.2|Name=Tc05v2_t012880.2|organism=Theobroma cacao|type=mRNA|length=1563bp
ATGGCTGTTTCTCCCAGGATAGGAATCGGAATCCCTCCCACTCCTTCCGC
TCACCGTCTTGCTATGTCCACTCTCTCCAACCCCTTCTTCTTTTTCTACT
CTTCTCCTCCACCCACCCTCCGTTTTCACTCGCCCTCCACACGCCCTCGC
CCCCTCTCTCTCCGTCCCAAGGCCTCTGCGGCCGCCCCCGTTGAGCCTCC
CCCCGTTCCAGCTAAATCAGTCGAGAATGTGGTGATCATAGGTTCAGGTC
CTGCTGGATATACGGCAGCAATATATGCAGCTCGTGCCAATTTGAAGCCT
GTAGTGTTTGAGGGATATCAAGTTGGTGGTGTTCCTGGAGGCCAGTTGAT
GACTACCACTGAAGTGGAGAACTTTCCTGGTTTTCCTGATGGAATAACTG
GTCCAGATTTGATGGATAGGATGCGACGACAAGCTGAGCGTTGGGGAGCA
GAATTGTTCCAAGAAGATGTGGAACACATTGATGTTAAAAACAATCCATT
TACAATACGGAGTAGTGAACGCGAGGTTAAGTGTCACAGCATGATTTTTG
CCACAGGAGCTACAGCAAAAAGGCTCAGGTTACCCCGTGAAGATGAATTT
TGGAGTAGGGGAATTAGTGCTTGTGCAATTTGTGACGGAGCATCACCATT
GTTTAAAGGTCAAGTGCTTGGTGTGGTTGGAGGAGGTGATACAGCTACAG
AGGAAGCATTGTACTTAACTAAGTATGCTCGTCATGTTCATTTACTTGTT
CGTAAAGACCAACTAAGAGCATCGAAAGCAATGCAAGATAGAGTTTACAA
CAATCCAAATATCACATTGCACTTCAATACAGAGACTGTGGATGTTGTTA
GCAATATGAAAGGTCAAATGTCGGGCATATTAACCAAAAGAGTTGATTCT
GGGGAGGAATCTGTGCTCGAGGCAAAAGGCTTGTTTTATGGTATAGGACA
TTCGCCAAATAGCCAGCTGCTGCAAGGCCAAGTCAAACTTGACAGCTCAG
GGTATGTGCTAGTAGAGGAGGGTAGTGCTAAAACTTCTGTAGAAGGTGTA
TTTGCAGCAGGAGATGTGCAGGACCACCAGTGGAGACAAGCCATAACTGC
TGCTGGATCTGGATGCATTGCAGCTTTGTCTGTTGAGCGGTACCTAGTTA
GCAATAATCTCCTTGTTGAATTTCATCAGCCTCAAACTGAAGAGGTTAAG
AAGGAGCTGACAGATAGAGATGTTCAAGAAGGTTTTGACATTACACTAAC
AAAACATAAGGGTCAGTATGCCTTGCGAAAGTTGTATCATGAGAGTCCAA
GGCTTATATGCGTATTATATACTGCACCAACTTGTGGTCCATGTCGGACT
TTGAAGCCAATTCTTAGCAAGGTGATTGATGAATTTGATCAGAATGTACA
TTTTGTTGAAATTGACATTGAGGAAGATCCAGAAATTGCAGAAGCTGCTG
GAATTATGGGCACCCCATGCGTGCAATTTTTCAAGAATAAGGAGATGATC
AGGACTGTGTCAGGGGTCAAAATGAAGAGAGAGTACAGAGAATTCATTGA
AGTGAATAAATGA
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protein sequence of Tc05v2_p012880.2

>Tc05v2_p012880.2 ID=Tc05v2_p012880.2|Name=Tc05v2_p012880.2|organism=Theobroma cacao|type=polypeptide|length=521bp
MAVSPRIGIGIPPTPSAHRLAMSTLSNPFFFFYSSPPPTLRFHSPSTRPR
PLSLRPKASAAAPVEPPPVPAKSVENVVIIGSGPAGYTAAIYAARANLKP
VVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA
ELFQEDVEHIDVKNNPFTIRSSEREVKCHSMIFATGATAKRLRLPREDEF
WSRGISACAICDGASPLFKGQVLGVVGGGDTATEEALYLTKYARHVHLLV
RKDQLRASKAMQDRVYNNPNITLHFNTETVDVVSNMKGQMSGILTKRVDS
GEESVLEAKGLFYGIGHSPNSQLLQGQVKLDSSGYVLVEEGSAKTSVEGV
FAAGDVQDHQWRQAITAAGSGCIAALSVERYLVSNNLLVEFHQPQTEEVK
KELTDRDVQEGFDITLTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRT
LKPILSKVIDEFDQNVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI
RTVSGVKMKREYREFIEVNK*
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