Tc05v2_t012880.1

Overview
NameTc05v2_t012880.1
Unique NameTc05v2_t012880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1500
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productthioredoxin reductase NTRC, transcript variant X2
NoteThioredoxin reductase NTRC
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598885
GenbankXM_007028606.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g012880Tc05v2_g012880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p012880.1Tc05v2_p012880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto278553auto278553Theobroma cacaoexon
exon-auto278554auto278554Theobroma cacaoexon
exon-auto278555auto278555Theobroma cacaoexon
exon-auto278556auto278556Theobroma cacaoexon
exon-auto278557auto278557Theobroma cacaoexon
exon-auto278558auto278558Theobroma cacaoexon
exon-auto278559auto278559Theobroma cacaoexon
exon-auto278560auto278560Theobroma cacaoexon
exon-auto278561auto278561Theobroma cacaoexon
exon-auto278562auto278562Theobroma cacaoexon
exon-auto278563auto278563Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto278564auto278564Theobroma cacaoCDS
CDS-auto278565auto278565Theobroma cacaoCDS
CDS-auto278566auto278566Theobroma cacaoCDS
CDS-auto278567auto278567Theobroma cacaoCDS
CDS-auto278568auto278568Theobroma cacaoCDS
CDS-auto278569auto278569Theobroma cacaoCDS
CDS-auto278570auto278570Theobroma cacaoCDS
CDS-auto278571auto278571Theobroma cacaoCDS
CDS-auto278572auto278572Theobroma cacaoCDS
CDS-auto278573auto278573Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t012880.1 ID=Tc05v2_t012880.1|Name=Tc05v2_t012880.1|organism=Theobroma cacao|type=mRNA|length=1500bp
ATGTCCACTCTCTCCAACCCCTTCTTCTTTTTCTACTCTTCTCCTCCACC
CACCCTCCGTTTTCACTCGCCCTCCACACGCCCTCGCCCCCTCTCTCTCC
GTCCCAAGGCCTCTGCGGCCGCCCCCGTTGAGCCTCCCCCCGTTCCAGCT
AAATCAGTCGAGAATGTGGTGATCATAGGTTCAGGTCCTGCTGGATATAC
GGCAGCAATATATGCAGCTCGTGCCAATTTGAAGCCTGTAGTGTTTGAGG
GATATCAAGTTGGTGGTGTTCCTGGAGGCCAGTTGATGACTACCACTGAA
GTGGAGAACTTTCCTGGTTTTCCTGATGGAATAACTGGTCCAGATTTGAT
GGATAGGATGCGACGACAAGCTGAGCGTTGGGGAGCAGAATTGTTCCAAG
AAGATGTGGAACACATTGATGTTAAAAACAATCCATTTACAATACGGAGT
AGTGAACGCGAGGTTAAGTGTCACAGCATGATTTTTGCCACAGGAGCTAC
AGCAAAAAGGCTCAGGTTACCCCGTGAAGATGAATTTTGGAGTAGGGGAA
TTAGTGCTTGTGCAATTTGTGACGGAGCATCACCATTGTTTAAAGGTCAA
GTGCTTGGTGTGGTTGGAGGAGGTGATACAGCTACAGAGGAAGCATTGTA
CTTAACTAAGTATGCTCGTCATGTTCATTTACTTGTTCGTAAAGACCAAC
TAAGAGCATCGAAAGCAATGCAAGATAGAGTTTACAACAATCCAAATATC
ACATTGCACTTCAATACAGAGACTGTGGATGTTGTTAGCAATATGAAAGG
TCAAATGTCGGGCATATTAACCAAAAGAGTTGATTCTGGGGAGGAATCTG
TGCTCGAGGCAAAAGGCTTGTTTTATGGTATAGGACATTCGCCAAATAGC
CAGCTGCTGCAAGGCCAAGTCAAACTTGACAGCTCAGGGTATGTGCTAGT
AGAGGAGGGTAGTGCTAAAACTTCTGTAGAAGGTGTATTTGCAGCAGGAG
ATGTGCAGGACCACCAGTGGAGACAAGCCATAACTGCTGCTGGATCTGGA
TGCATTGCAGCTTTGTCTGTTGAGCGGTACCTAGTTAGCAATAATCTCCT
TGTTGAATTTCATCAGCCTCAAACTGAAGAGGTTAAGAAGGAGCTGACAG
ATAGAGATGTTCAAGAAGGTTTTGACATTACACTAACAAAACATAAGGGT
CAGTATGCCTTGCGAAAGTTGTATCATGAGAGTCCAAGGCTTATATGCGT
ATTATATACTGCACCAACTTGTGGTCCATGTCGGACTTTGAAGCCAATTC
TTAGCAAGGTGATTGATGAATTTGATCAGAATGTACATTTTGTTGAAATT
GACATTGAGGAAGATCCAGAAATTGCAGAAGCTGCTGGAATTATGGGCAC
CCCATGCGTGCAATTTTTCAAGAATAAGGAGATGATCAGGACTGTGTCAG
GGGTCAAAATGAAGAGAGAGTACAGAGAATTCATTGAAGTGAATAAATGA
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protein sequence of Tc05v2_p012880.1

>Tc05v2_p012880.1 ID=Tc05v2_p012880.1|Name=Tc05v2_p012880.1|organism=Theobroma cacao|type=polypeptide|length=500bp
MSTLSNPFFFFYSSPPPTLRFHSPSTRPRPLSLRPKASAAAPVEPPPVPA
KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTE
VENFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEHIDVKNNPFTIRS
SEREVKCHSMIFATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQ
VLGVVGGGDTATEEALYLTKYARHVHLLVRKDQLRASKAMQDRVYNNPNI
TLHFNTETVDVVSNMKGQMSGILTKRVDSGEESVLEAKGLFYGIGHSPNS
QLLQGQVKLDSSGYVLVEEGSAKTSVEGVFAAGDVQDHQWRQAITAAGSG
CIAALSVERYLVSNNLLVEFHQPQTEEVKKELTDRDVQEGFDITLTKHKG
QYALRKLYHESPRLICVLYTAPTCGPCRTLKPILSKVIDEFDQNVHFVEI
DIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVSGVKMKREYREFIEVNK*
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