Tc05v2_t012770.1

Overview
NameTc05v2_t012770.1
Unique NameTc05v2_t012770.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length939
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription initiation factor IIB-2
NoteTranscription initiation factor IIB-2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598897
GenbankXM_007028626.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g012770Tc05v2_g012770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p012770.1Tc05v2_p012770.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto278382auto278382Theobroma cacaoexon
exon-auto278383auto278383Theobroma cacaoexon
exon-auto278384auto278384Theobroma cacaoexon
exon-auto278385auto278385Theobroma cacaoexon
exon-auto278386auto278386Theobroma cacaoexon
exon-auto278387auto278387Theobroma cacaoexon
exon-auto278388auto278388Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto278389auto278389Theobroma cacaoCDS
CDS-auto278390auto278390Theobroma cacaoCDS
CDS-auto278391auto278391Theobroma cacaoCDS
CDS-auto278392auto278392Theobroma cacaoCDS
CDS-auto278393auto278393Theobroma cacaoCDS
CDS-auto278394auto278394Theobroma cacaoCDS
CDS-auto278395auto278395Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t012770.1 ID=Tc05v2_t012770.1|Name=Tc05v2_t012770.1|organism=Theobroma cacao|type=mRNA|length=939bp
ATGGCGGACGCTTTTTGTTCGGACTGCAAGCGGCACACGGAGGTGGTTTT
CGACCACTCGGCCGGAGATACGGTGTGTTCGGAGTGCGGGTTAGTGTTGG
AGTCGCACTCGATCGACGAGACGTCGGAGTGGAGAACCTTCGCCAACGAG
TCGGGCGATAATGATCCTGTCCGTGTCGGTGGTCCCACCAACCCGCTTTT
GGCGGATGGCGGCTTATCCACCGTTATTGCTAAGCCTAACGGTGCTTCTG
GAGAATTCCTCTCGTCTTCGTTGGGTCGGTGGCAGAATCGTGGTTCGAAT
CCGGATCGCGGGTTGATTCTTGCTTTTAAGACTATTGCTACCATGTCTGA
TAGGTTGGGTCTTGTTGCAACTATCAAGGATCGAGCCAATGAGATATATA
AGAAGGTGGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGACGCGTTG
TTGGCTGCTTGCCTATACATTGCTTGTCGACAAGAGGATAAGCCACGCAC
AGTCAAGGAAATTTGCTCTGTCGCCAATGGAGCCACAAAGAAAGAAATTG
GCCGAGCAAAAGAATACATAGTGAAACAACTGGGATTGGAGACTGGTCAG
TCTGTGGAGATGGGAACTATACATGCTGGTGATTTCATGAGACGATTTTG
TTCCAATCTTGGTATGAATAATCAAGCAGTTAAAGCTGCCCAAGAAGCAG
TTCAGAAGTCAGAGGAGTTTGATATAAGGCGAAGCCCTATATCAATTGCA
GCAGCAGTTATTTACATCATAACGCAGCTTTCAGATGATAAGAAACCTCT
AAGAGATATTTCAGTTGCTACTGGAGTTGCGGAAGGGACAATCCGAAATT
CATACAAGGATCTTTATCCCCATGTGTCAAAGATAATACCAAACTGGTAT
GCCAAGGGAGAAGATCTCAAGAATCTATGCAGTCCTTGA
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protein sequence of Tc05v2_p012770.1

>Tc05v2_p012770.1 ID=Tc05v2_p012770.1|Name=Tc05v2_p012770.1|organism=Theobroma cacao|type=polypeptide|length=313bp
MADAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE
SGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN
PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL
LAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ
SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIA
AAVIYIITQLSDDKKPLRDISVATGVAEGTIRNSYKDLYPHVSKIIPNWY
AKGEDLKNLCSP*
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