Tc05v2_t011790.1

Overview
NameTc05v2_t011790.1
Unique NameTc05v2_t011790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1401
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Productcystathionine beta-lyase, chloroplastic, transcript variant X2
NoteCystathionine beta-lyase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598782
GenbankXM_007028458.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g011790Tc05v2_g011790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p011790.1Tc05v2_p011790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto276698auto276698Theobroma cacaoexon
exon-auto276699auto276699Theobroma cacaoexon
exon-auto276700auto276700Theobroma cacaoexon
exon-auto276701auto276701Theobroma cacaoexon
exon-auto276702auto276702Theobroma cacaoexon
exon-auto276703auto276703Theobroma cacaoexon
exon-auto276704auto276704Theobroma cacaoexon
exon-auto276705auto276705Theobroma cacaoexon
exon-auto276706auto276706Theobroma cacaoexon
exon-auto276707auto276707Theobroma cacaoexon
exon-auto276708auto276708Theobroma cacaoexon
exon-auto276709auto276709Theobroma cacaoexon
exon-auto276710auto276710Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto276711auto276711Theobroma cacaoCDS
CDS-auto276712auto276712Theobroma cacaoCDS
CDS-auto276713auto276713Theobroma cacaoCDS
CDS-auto276714auto276714Theobroma cacaoCDS
CDS-auto276715auto276715Theobroma cacaoCDS
CDS-auto276716auto276716Theobroma cacaoCDS
CDS-auto276717auto276717Theobroma cacaoCDS
CDS-auto276718auto276718Theobroma cacaoCDS
CDS-auto276719auto276719Theobroma cacaoCDS
CDS-auto276720auto276720Theobroma cacaoCDS
CDS-auto276721auto276721Theobroma cacaoCDS
CDS-auto276722auto276722Theobroma cacaoCDS
CDS-auto276723auto276723Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t011790.1 ID=Tc05v2_t011790.1|Name=Tc05v2_t011790.1|organism=Theobroma cacao|type=mRNA|length=1401bp
ATGGCATCATCGCTCCCTCTCAGGCCTTTCTTGTCCTCCATCTACTCTGT
TCCTAACCACAAGAACGGTCCTTTGCTAGAGAATTTCCCAAGAAGTTCAG
AGGTTAACAAGGAATTATATTTAGAGAGAAGGCAGCTGTTGTCCGGAAAG
CAATTCAGATTGAATTGTTTAGGGCACAGAGACATGGATGTGAGTGCTTC
AGTTTTGGTTGATTCTGTAACAGAATGCTCAGCTGAACTGAATGTTGAGG
ACCAGGAGCCTAGTATTTCGACATTGTTGATGAATATTGAGAGTAACTTT
GATCCCTATGGTGCAATGAGTACACCCCTTTATCAAACTGCTACATTTAA
GCAGCCTTCAGCAATTGATAATGGGCCCTATGATTATACTAGAAGTGGAA
ATCCTACACGGGATGTTTTGGAAAGGCTCTTAGCAAAGCTCGAAAAGGCA
GATCGAGCATTTTGCTTTACTAGTGGAATGGCTGCTTTATCTGCTGTTGC
TCAGCTTGTTGGAACTGGTGAAGAAATTGTTGCCGGAGATGACATCTATG
GTGGTTCTGATCGTTTATTATCTCAAGTAACTCCAAAATATGGAGTTGTG
GTGAAACGAGTAAACACCAGTGATCTAGATGAAGTTCGGGCAGTTATTGG
CCCCAAGACAAAGCTTGTGTGGCTGGAGAGTCCTACCAACCCTCGACAAC
AAATTGCTGATATTCGTAGAATTGCAGAAATGGCTCATGCTTATGGGGCT
CTCATGTTGGTAGACAACAGTATTATGTCCCCAGTATTGTCACAACCATT
AAAACTTGGAGCAGACATTGTGATGCACTCCGCTACTAAATTTATAGCTG
GACATAGCGACGTCATGGCAGGCGTGCTCGCTGTTAAGGGAGAGAGCTTG
GCAGAGCAGTTGTATTTCCTACAAAATGCAGTAGGCTCTGGGTTAGCTCC
TTTTGATTGTTGGATCTGTTTAAGAGGTATCAAGACCATGGCCTTGCGTA
TTGAAAAACAACAGGAAAATGCACAAAAGATTGCTGAGTTCCTTTCTTCC
CATCCACTAGTGAAGAAAGTTAACTATGCTGGTCTTCCTGATCACCCTGG
ACGTGATTTACATTATTCTCAGGCAAAGGGTGCAGGATCTGTTCTTAGTT
TTTTGACAGGTTCTCTGGCACTCTCAAAGCATGTTGTTGAGACTACTAAA
TACTTCAGCATAACAGTTAGCTTCGGGAGTGTGAAATCCCTGATAAGCAT
GCCATGCTTCATGTCCCATGCGAGCATACCGAGTGCAGTGCGTGAGGCAA
GAGGTCTAACTGAAGATCTTGTTCGGATATCCGTTGGGATTGAGGATGTA
AACGACCTCATTGCTGATCTGGACAATGCCCTCAGAACTGGCCCTCTTTA
G
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protein sequence of Tc05v2_p011790.1

>Tc05v2_p011790.1 ID=Tc05v2_p011790.1|Name=Tc05v2_p011790.1|organism=Theobroma cacao|type=polypeptide|length=467bp
MASSLPLRPFLSSIYSVPNHKNGPLLENFPRSSEVNKELYLERRQLLSGK
QFRLNCLGHRDMDVSASVLVDSVTECSAELNVEDQEPSISTLLMNIESNF
DPYGAMSTPLYQTATFKQPSAIDNGPYDYTRSGNPTRDVLERLLAKLEKA
DRAFCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVTPKYGVV
VKRVNTSDLDEVRAVIGPKTKLVWLESPTNPRQQIADIRRIAEMAHAYGA
LMLVDNSIMSPVLSQPLKLGADIVMHSATKFIAGHSDVMAGVLAVKGESL
AEQLYFLQNAVGSGLAPFDCWICLRGIKTMALRIEKQQENAQKIAEFLSS
HPLVKKVNYAGLPDHPGRDLHYSQAKGAGSVLSFLTGSLALSKHVVETTK
YFSITVSFGSVKSLISMPCFMSHASIPSAVREARGLTEDLVRISVGIEDV
NDLIADLDNALRTGPL*
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