Tc05v2_t010840.1

Overview
NameTc05v2_t010840.1
Unique NameTc05v2_t010840.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1185
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Producthydroxymethylglutaryl-CoA lyase, mitochondrial
NoteHydroxymethylglutaryl-CoA lyase, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598624
GenbankXM_018122068.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010840Tc05v2_g010840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010840.1Tc05v2_p010840.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto274298auto274298Theobroma cacaoexon
exon-auto274299auto274299Theobroma cacaoexon
exon-auto274300auto274300Theobroma cacaoexon
exon-auto274301auto274301Theobroma cacaoexon
exon-auto274302auto274302Theobroma cacaoexon
exon-auto274303auto274303Theobroma cacaoexon
exon-auto274304auto274304Theobroma cacaoexon
exon-auto274305auto274305Theobroma cacaoexon
exon-auto274306auto274306Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto274307auto274307Theobroma cacaoCDS
CDS-auto274308auto274308Theobroma cacaoCDS
CDS-auto274309auto274309Theobroma cacaoCDS
CDS-auto274310auto274310Theobroma cacaoCDS
CDS-auto274311auto274311Theobroma cacaoCDS
CDS-auto274312auto274312Theobroma cacaoCDS
CDS-auto274313auto274313Theobroma cacaoCDS
CDS-auto274314auto274314Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010840.1 ID=Tc05v2_t010840.1|Name=Tc05v2_t010840.1|organism=Theobroma cacao|type=mRNA|length=1185bp
ATGATAGCGGCAAGGCGTGTTGATAAGATATCTCGCCTGAAAGGTACTCC
CGCCCCAAAGTCGATGACTACCGTAATCGGAGGCGGAGCCACCCCTTCTT
CTTCTTCTTCTTCTTCGCTGAAAGCTCTCAACAAGGGGTCATTGCTTTGG
AGAGAATTCTTTTACCCTAAAAATAGGCTACTTGGTAATAATAATCGTGA
TCCTGGCTATTTGTCAACTTACCATTACAGCTCCATTTGTAATCATAGAC
CCACAAATAAGGTTTTAAGAAACCTTCCAGGATATGTGAAGATTGTGGAG
GTTGGTCCAAGGGACGGATTGCAAAATGAAAAGGAAATAGTACCAACCAC
TGTAAAGGTCCAGTTGATAAAAATGCTAGTTTCTTCAGGATTGACTGTCG
TCGAGGCAACAAGTTTTGTCTCGCCAAAATGGGTTCCACAGCTGGCAGAT
GCAAAGGATGTAATGGATGCAATCCAGAATATTCAAGGAGGAAGATTTCC
AGTGTTAACGCCCAACCTTAAAGGTTTTGAAGCTGCTGTTGCAGCTGGAG
CCAAGGAAGTGGCCATCTTTGCCTCAGCTTCTGAGTCTTTTTCTAAGTCA
AACATAAATTGTAGCATCAAAGATAGTCTTGCTCGTTATAGAGATGTTGC
TTCTGCTGCCAGAGAGCTCTCACTTCCAGTTCGAGGATATATATCCTGTG
TTGTTGGTTGTCCGGTGGAAGGAACGGTGCCTCCATCAAAAGTGGCATAT
GTGGCTAAACAGCTCTTTGATATGGGTTGCTCTGAAATTTCCCTTGGTGA
TACAATTGGTGTTGGTACACCTGGTACTGTCATTCCAATGCTTGAAAACG
TTATTCATGTTGTCCCAATTGATAAGCTCGCTGTCCATTTTCATGACACT
TATGGGCAAGCTCTTTCAAATATTCTAATATCGCTCCAAATGGGGATCAG
CACTGTGGATTCATCTGTTTCCGGTCTTGGAGGTTGTCCATATGCTAAAG
GTGCTTCAGGAAATGTTGCCACTGAGGATGTTGTTTACATGCTCAATGGA
CTTGGAGTAGAGACACATGTGGATCTTGAAAAGCTCATGTTGGCTGGGGA
TTTTATCTGCAAGCATTTAGGGCGGCCATCTAGTTCCAAGACAGCAGTTG
CCTTAAGTAGTAAGAAAGCTAACTCCAAGCTTTAA
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protein sequence of Tc05v2_p010840.1

>Tc05v2_p010840.1 ID=Tc05v2_p010840.1|Name=Tc05v2_p010840.1|organism=Theobroma cacao|type=polypeptide|length=395bp
MIAARRVDKISRLKGTPAPKSMTTVIGGGATPSSSSSSSLKALNKGSLLW
REFFYPKNRLLGNNNRDPGYLSTYHYSSICNHRPTNKVLRNLPGYVKIVE
VGPRDGLQNEKEIVPTTVKVQLIKMLVSSGLTVVEATSFVSPKWVPQLAD
AKDVMDAIQNIQGGRFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKS
NINCSIKDSLARYRDVASAARELSLPVRGYISCVVGCPVEGTVPPSKVAY
VAKQLFDMGCSEISLGDTIGVGTPGTVIPMLENVIHVVPIDKLAVHFHDT
YGQALSNILISLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG
LGVETHVDLEKLMLAGDFICKHLGRPSSSKTAVALSSKKANSKL*
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