Tc05v2_t007860.1

Overview
NameTc05v2_t007860.1
Unique NameTc05v2_t007860.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1716
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productsignal recognition particle 54 kDa protein, chloroplastic
NoteSignal recognition particle 54 kDa protein, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598256
GenbankXM_007027717.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g007860Tc05v2_g007860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p007860.1Tc05v2_p007860.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto268994auto268994Theobroma cacaoexon
exon-auto268995auto268995Theobroma cacaoexon
exon-auto268996auto268996Theobroma cacaoexon
exon-auto268997auto268997Theobroma cacaoexon
exon-auto268998auto268998Theobroma cacaoexon
exon-auto268999auto268999Theobroma cacaoexon
exon-auto269000auto269000Theobroma cacaoexon
exon-auto269001auto269001Theobroma cacaoexon
exon-auto269002auto269002Theobroma cacaoexon
exon-auto269003auto269003Theobroma cacaoexon
exon-auto269004auto269004Theobroma cacaoexon
exon-auto269005auto269005Theobroma cacaoexon
exon-auto269006auto269006Theobroma cacaoexon
exon-auto269007auto269007Theobroma cacaoexon
exon-auto269008auto269008Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto269009auto269009Theobroma cacaoCDS
CDS-auto269010auto269010Theobroma cacaoCDS
CDS-auto269011auto269011Theobroma cacaoCDS
CDS-auto269012auto269012Theobroma cacaoCDS
CDS-auto269013auto269013Theobroma cacaoCDS
CDS-auto269014auto269014Theobroma cacaoCDS
CDS-auto269015auto269015Theobroma cacaoCDS
CDS-auto269016auto269016Theobroma cacaoCDS
CDS-auto269017auto269017Theobroma cacaoCDS
CDS-auto269018auto269018Theobroma cacaoCDS
CDS-auto269019auto269019Theobroma cacaoCDS
CDS-auto269020auto269020Theobroma cacaoCDS
CDS-auto269021auto269021Theobroma cacaoCDS
CDS-auto269022auto269022Theobroma cacaoCDS
CDS-auto269023auto269023Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t007860.1 ID=Tc05v2_t007860.1|Name=Tc05v2_t007860.1|organism=Theobroma cacao|type=mRNA|length=1716bp
ATGGAGGCAATGCATTTTCCAACCGTTGCTTCCCGCCATTTCTCGGCGAC
TTCCGGTTCCTTTACGACGAACAGGAAGTTCTACAACAGTCCCAGAAACA
CAACTTTGCTTGGAAGTACATGGAGTATTGGTTCGAGCGATTTCACTTCC
CTTTCTTCGAGGAATTTGTTCACTAGAGAAATATGGGGGTGGGTAAATTC
CAAGACGATAACTTTAAGGAGAGAGATGCGAGGTGTTGTACGAGCTGAAA
TGTTTGGACAATTGACGAGTGGCCTCGAAGCTGCTTGGACCAAGCTTAAA
GGAGAAGAGGTTTTGACAAAGGAGAACATTGTGGAGCCAATGCGCGATAT
TAGGAGAGCACTTTTGGAAGCAGATGTTAGTCTTCCTGTTGTTAGAAGGT
TTGTCCAAGCTGTTAGTGACCAGGCTGTTGGAGTTGGCCTTATTCGAGGA
GTGAAGCCGGATCAACAATTGGTTAAGATTGTACATGATGAGCTTGTGAA
ATTGATGGGAGGAGAGGTTTCTGAACTGGTCTTTTCAAAATCTGGCCCCA
CTGTTATATTATTGGCTGGTCTGCAAGGGGTTGGAAAGACAACTGTTTGT
GCGAAGTTAGCTAATTATCTTAAGAAACAGGGTAAGAGTTGCATGCTTAT
CGCAGGAGATGTCTACAGACCTGCTGCTATCGATCAACTCGTTATTTTGG
GTGAACAGGTGGGCGTTCCTGTATATACAGCAGGGACTGAGGTCAAACCA
TCTGAAATAGCGAAGCAAGGCTTAGAAGAGGCCAAAAAGAAGAAGATAGA
TATAGTGATAATGGATACTGCAGGAAGGCTCCAGATTGATAAAGCAATGA
TGGATGAGTTGAAAGAAGTGAAGAAAGTATTGAATCCCACAGAAGTTTTG
CTGGTTGTGGATGCAATGACTGGCCAAGAAGCTGCTGCCTTGGTCACAAC
ATTCAATGTTGAGATAGGGATCACTGGTGCCATTTTGACAAAGCTAGATG
GAGATTCTAGAGGTGGCGCAGCTTTGAGTGTTAAAGAGGTGTCTGGGAAG
CCAATCAAGCTCGTAGGACGCGGAGAGCGCATGGAGGACCTTGAGCCTTT
CTATCCAGATCGTATGGCTGGACGCATCTTGGGAATGGGAGACGTTCTCT
CATTTGTTGAAAAGGCACAAGAAGTTATGCACCAAGAAGATGCTGAAGAG
CTGCAAAAGAAGATAATGAGTGCAAAGTTTGACTTCAATGATTTCCTAAA
GCAGACTCGTGCTGTTGCACAAATGGGCTCCATGACTCGTGTTATTGGAA
TGATCCCTGGAATGGGGAAGGTTACCCCAGCCCAAGTTCGAGAAGCAGAG
AAGAGTTTAAAGATAATGGAGGCAATGATTGAAGCCATGACACCAGAGGA
AAGGGAGAAGCCGGAGTTATTGGCTGAGTCTCCTGAAAGGAGGAAAAGAG
TTGCTCAAGGTTCTGGTAAAACAGAGCAGCAGGTGAGTCAACTTGTCGCT
CAACTCTTCCAAATGCGTGTTCGTATGAAGAATTTGATGGGTGTAATGGA
AGGTGGATCTATTCCAACATTGAGCAATCTTGAGGATGCAATGAAAGCTG
AACAAAAGGCTCCTCCTGGTACTGCAAGAAGAAAGAGGAGATCAGAGTCA
AGAAGGCAGTTTGCAGACTCAGCATCAACAAGGCCAAGTCCTCGTGGTTT
CGGGGCAAAGAACTAG
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protein sequence of Tc05v2_p007860.1

>Tc05v2_p007860.1 ID=Tc05v2_p007860.1|Name=Tc05v2_p007860.1|organism=Theobroma cacao|type=polypeptide|length=572bp
MEAMHFPTVASRHFSATSGSFTTNRKFYNSPRNTTLLGSTWSIGSSDFTS
LSSRNLFTREIWGWVNSKTITLRREMRGVVRAEMFGQLTSGLEAAWTKLK
GEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSDQAVGVGLIRG
VKPDQQLVKIVHDELVKLMGGEVSELVFSKSGPTVILLAGLQGVGKTTVC
AKLANYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKP
SEIAKQGLEEAKKKKIDIVIMDTAGRLQIDKAMMDELKEVKKVLNPTEVL
LVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGK
PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMHQEDAEE
LQKKIMSAKFDFNDFLKQTRAVAQMGSMTRVIGMIPGMGKVTPAQVREAE
KSLKIMEAMIEAMTPEEREKPELLAESPERRKRVAQGSGKTEQQVSQLVA
QLFQMRVRMKNLMGVMEGGSIPTLSNLEDAMKAEQKAPPGTARRKRRSES
RRQFADSASTRPSPRGFGAKN*
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