Tc05v2_t007560.3

Overview
NameTc05v2_t007560.3
Unique NameTc05v2_t007560.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1257
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprotein ABSCISIC ACID-INSENSITIVE 5, transcript variant X2
NotePutative Protein ABSCISIC ACID-INSENSITIVE 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598227
GenbankXM_018121905.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g007560Tc05v2_g007560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p007560.3Tc05v2_p007560.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto268513auto268513Theobroma cacaoexon
exon-auto268514auto268514Theobroma cacaoexon
exon-auto268515auto268515Theobroma cacaoexon
exon-auto268516auto268516Theobroma cacaoexon
exon-auto268517auto268517Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto268518auto268518Theobroma cacaoCDS
CDS-auto268519auto268519Theobroma cacaoCDS
CDS-auto268520auto268520Theobroma cacaoCDS
CDS-auto268521auto268521Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t007560.3 ID=Tc05v2_t007560.3|Name=Tc05v2_t007560.3|organism=Theobroma cacao|type=mRNA|length=1257bp
ATGGTGATTACGGAATCTGAGATTGGCGAGGTTGAGTCATCGTTGCAGGT
GGATCAGCAGCAGAAGAACCACCCTTTCTCGTCCCTTGGAAGACAATCCT
CAATCTATTCCCTCACTCTTGATGAGTTCCAGCACACGGTATGTGAGGAT
GGGAAGAACTTCGGGTCCATGAACATGGACGAGTTCATTACCAGCATCTG
GAACGCTGAAGAAAACCAAGCTATCAACTCCAACATTTACAATCAGCAGA
GCAACTGTGCAAATAAACAAGTTAGCAGCTATGTTCATTTGTCGTTGAAT
GAAACAACAAGCAATAACGGCATAGCTAAGCAGCCTAGCCTGCCAAGGCA
AGGCTCGCTTACGCTTCCTGCACCTCTTTGTAGGAAGACTGTTGATGAAG
TTTGGTCTGAGATGCATCAAGGGCAGCAAGGACAAGGACAGAGCAACAAT
AGCAATGTAGAGAATGCTGAGAATGGAACCCGGCAGCCAACTTTTGGGGA
GATGACCTTGGAGGATTTCTTGATTAAGGCAGGGGTAAGGGAACAATGCA
TGCTACCAGCACCGCCTCCGCAGCACCAACCGCAATATGGGTTGTATCAG
AGTGGCAATAACGCTGCGGGGGGTCCAGGTTTTGTTTCCAGGCCCATTAT
GGGAGTGGATAGCAAAGGTGGCTTTGGTGGGAGTGCATACCAGACAATGC
CTCCAGGTGGAGTCATCGGTGATTCATCTGGGTATGTTAATGATTGTAAA
AGGGGTAGTGGCTATCAGCCAACTGCTCCGCCACCAACGACAGTTTGTTA
CAGTGGGAAGGTAGCTGCTGCTGGTGCCTATGTACGTGGACAGGCAATGG
GAGTGGTGTCACCAATGAGTCCAGTATCATCAGAAGGGATGTGTAACAGT
CAAGTTGATAATGCTGCTAATCATTTTGGGATGGATATGGGCGGACTAAG
GGGAAGGAAAAGGATCATTGAGGGTCCAATAGAGAAGGTAGTTGAGAGAA
GGCAACGCAGGATGATTAAGAATAGGGAGTCAGCTGCAAGGTCTAGAGCT
AGAAAACAGGCATATACAGTCGAGCTAGAAGCAGAATTGGACCAATTGAA
ACAAGAGAATGCCCATCTTAAGCAGGCTCTGGAAGAACTCGACAGGAAAA
GGAAGCAACAGTACTTTGAGGAAAGGAAAATGATAACACAAACCGAAGCC
CAAAAAGCTAAAGAGAAACTAAGAATAATAAGAAGAAATCTGAGTTGCCC
ATTGTAA
back to top

protein sequence of Tc05v2_p007560.3

>Tc05v2_p007560.3 ID=Tc05v2_p007560.3|Name=Tc05v2_p007560.3|organism=Theobroma cacao|type=polypeptide|length=419bp
MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQHTVCED
GKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLN
ETTSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHQGQQGQGQSNN
SNVENAENGTRQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQ
SGNNAAGGPGFVSRPIMGVDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCK
RGSGYQPTAPPPTTVCYSGKVAAAGAYVRGQAMGVVSPMSPVSSEGMCNS
QVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERRQRRMIKNRESAARSRA
RKQAYTVELEAELDQLKQENAHLKQALEELDRKRKQQYFEERKMITQTEA
QKAKEKLRIIRRNLSCPL*
back to top