Tc05v2_t007380.1

Overview
NameTc05v2_t007380.1
Unique NameTc05v2_t007380.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1035
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producturidine nucleosidase 1
NoteUridine nucleosidase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598203
GenbankXM_007027624.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g007380Tc05v2_g007380Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p007380.1Tc05v2_p007380.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto268231auto268231Theobroma cacaoexon
exon-auto268232auto268232Theobroma cacaoexon
exon-auto268233auto268233Theobroma cacaoexon
exon-auto268234auto268234Theobroma cacaoexon
exon-auto268235auto268235Theobroma cacaoexon
exon-auto268236auto268236Theobroma cacaoexon
exon-auto268237auto268237Theobroma cacaoexon
exon-auto268238auto268238Theobroma cacaoexon
exon-auto268239auto268239Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto268240auto268240Theobroma cacaoCDS
CDS-auto268241auto268241Theobroma cacaoCDS
CDS-auto268242auto268242Theobroma cacaoCDS
CDS-auto268243auto268243Theobroma cacaoCDS
CDS-auto268244auto268244Theobroma cacaoCDS
CDS-auto268245auto268245Theobroma cacaoCDS
CDS-auto268246auto268246Theobroma cacaoCDS
CDS-auto268247auto268247Theobroma cacaoCDS
CDS-auto268248auto268248Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t007380.1 ID=Tc05v2_t007380.1|Name=Tc05v2_t007380.1|organism=Theobroma cacao|type=mRNA|length=1035bp
ATGGATTGTGAAATGAAGAAAAATTCTCACGATGGGATTGTCGTTAATGG
CAAAAACGAGGGCGTTTTCGGCTCACCTGCCAAGAGGATCAAGCTCATTA
TCGATACTGACCCCGGAATCGATGATAGTATGGCAATCTTAATGGCATTC
CAAAGTCCGGAGTTGGAGATCTTAGGTTTGACGACAATATTTGGTAATGT
TGCTACAGAAGATGCCACCTGTAATGCCTTACTTCTGTGTGAGATCGCAG
GGTGTCCAGATGTTCCTGTAGCAGAAGGCAGCCCTGAACCTCTTAAGGGT
GGGAGGCCACGTATCGCTGACTTTGTTCATGGTTCTGATGGACTGGGGAA
CATATTTCTACCTCCTCAAAAAACAAAGAAATCTGAGAAGAGTGCCTCTG
AATTTTTAGTTGAAAAGGTCTCTGAATATCCTGGTGAAGTATCCATACTT
GCACTTGGACCGCTGACAAACTTGGCATTGGCAATCAGAAGGGACTCAAC
CTTTGCTAACAAGGTGAAAAATATAGTTGTACTTGGTGGTGCATTCTTTG
CATTAGGAAATGTGAATCCTGCTGCTGAAGCAAATATTTATGGAGACCCT
GAAGCAGCTGATGTTGTGTTTACTTCGGGAGCTAATATTGTTGTTGTTGG
GATTAACATTACTACCCAAGTCAAAATGACAGATGATGACCTCCTCGAAC
TGAAACAATCAAAGGGAAAGTATGCTCAGCTGCTGAGTAACATGTGCAAA
TTCTACAGAGATTGGCATGTGAAGTCTGACGGTGTATATGGGATATTTCT
TCATGACCCTGTCAGTTTTGTGGCTCTAGTTCGGCCAGATCTCTTCACAT
ACAAGAAGGGGGTTGTGAGGGTTGAGACACAGGGCATATGTGTGGGGCAT
ACATTGTTGGATCAAGGATTAAAAAGATGGAATGGAAGCAACCCTTGGAC
AGGCTATTCCCCAGTTTCTGTCGCTTGGACAGTCAATGTGGATGAAGTCC
TCAAGTATATTAAGAAACTGTTGATGAAACCATAA
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protein sequence of Tc05v2_p007380.1

>Tc05v2_p007380.1 ID=Tc05v2_p007380.1|Name=Tc05v2_p007380.1|organism=Theobroma cacao|type=polypeptide|length=345bp
MDCEMKKNSHDGIVVNGKNEGVFGSPAKRIKLIIDTDPGIDDSMAILMAF
QSPELEILGLTTIFGNVATEDATCNALLLCEIAGCPDVPVAEGSPEPLKG
GRPRIADFVHGSDGLGNIFLPPQKTKKSEKSASEFLVEKVSEYPGEVSIL
ALGPLTNLALAIRRDSTFANKVKNIVVLGGAFFALGNVNPAAEANIYGDP
EAADVVFTSGANIVVVGINITTQVKMTDDDLLELKQSKGKYAQLLSNMCK
FYRDWHVKSDGVYGIFLHDPVSFVALVRPDLFTYKKGVVRVETQGICVGH
TLLDQGLKRWNGSNPWTGYSPVSVAWTVNVDEVLKYIKKLLMKP*
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