Tc05v2_t006590.2

Overview
NameTc05v2_t006590.2
Unique NameTc05v2_t006590.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3498
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase UPL7, transcript variant X1
NoteE3 ubiquitin-protein ligase UPL7
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598115
GenbankXM_007027490.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g006590Tc05v2_g006590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p006590.2Tc05v2_p006590.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto266614auto266614Theobroma cacaoexon
exon-auto266615auto266615Theobroma cacaoexon
exon-auto266616auto266616Theobroma cacaoexon
exon-auto266617auto266617Theobroma cacaoexon
exon-auto266618auto266618Theobroma cacaoexon
exon-auto266619auto266619Theobroma cacaoexon
exon-auto266620auto266620Theobroma cacaoexon
exon-auto266621auto266621Theobroma cacaoexon
exon-auto266622auto266622Theobroma cacaoexon
exon-auto266623auto266623Theobroma cacaoexon
exon-auto266624auto266624Theobroma cacaoexon
exon-auto266625auto266625Theobroma cacaoexon
exon-auto266626auto266626Theobroma cacaoexon
exon-auto266627auto266627Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto266628auto266628Theobroma cacaoCDS
CDS-auto266629auto266629Theobroma cacaoCDS
CDS-auto266630auto266630Theobroma cacaoCDS
CDS-auto266631auto266631Theobroma cacaoCDS
CDS-auto266632auto266632Theobroma cacaoCDS
CDS-auto266633auto266633Theobroma cacaoCDS
CDS-auto266634auto266634Theobroma cacaoCDS
CDS-auto266635auto266635Theobroma cacaoCDS
CDS-auto266636auto266636Theobroma cacaoCDS
CDS-auto266637auto266637Theobroma cacaoCDS
CDS-auto266638auto266638Theobroma cacaoCDS
CDS-auto266639auto266639Theobroma cacaoCDS
CDS-auto266640auto266640Theobroma cacaoCDS
CDS-auto266641auto266641Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t006590.2 ID=Tc05v2_t006590.2|Name=Tc05v2_t006590.2|organism=Theobroma cacao|type=mRNA|length=3498bp
ATGGAGGAACCTCGGAAACATCAGGTATCGTTGAGAGGAGCAAGCGCGAA
AGAGATATCGAGAGATGCGCTTCTCGAGAAAGTTTCTCAAGAAAGAGAGA
ATCGCAATTATGCCAGACGAGCTGCTTCCGCTGCAATCTTTATCCAGAGA
GTCTGGAGAAGCTATAACGTTACAATGAAAGTGGCTATCAAGCTTCAAGA
AGAATGGGAAAGTTTTGTGAAAAATCAAGCTGAGTTGATGACTGCAAATT
TAATTTCCAGCAGTGTTTTGAGGCCTTTTATTTTCTTTATTACATGTTTA
TCAATTCGGCGTCGAAAGATTCTTGCCAGAGTCTCAAACTGTATGCAGAC
TTGCTTTAAGATTCTCTTGGAAAGCATAAATTCAACTGATTCAAAGAAGA
ATTTTTGCTCCCTGGCTGTGGGTACAATGGAAGAGAGAAGAACACTGACT
TATCAAGCGCAGAAGCTGATTTCACTCTGCTCATTTGTTCTTGCACAGTG
TGATACGTCACACGGAGGGAGTCAAGATCTTGTTGTTCTGACATCTCTGG
CATTGCGTCTTGTTGTTGTCTTAACTGATCTGAAAAGTTGGAAGATTGTT
AGTGATGACAATATTGGGAATGTAGATGCAACAGTGAAGAATTTGGTTTG
TTTTATGGGAAGCTATAAAGGTGGCCTTTATGTATCTATGAGAAGATACA
TAAGCAAATTGGATGTTTGTTTTTCTCCAGAAGTAAAGAATATTGTCCAG
ACTGATGATAAATTCTTGATCACTGCAAGTGCAATTAGTCTGGCTATTCG
GCCATTTAGTTTGACAACCTTTGATGCAACTTGTCCTGGTCAGTTCGATG
TGCATTCTGCTGTTGAGCAGTACTGTTTGTTTTTACTTACAATTCCTTGG
CTCACGCAACGTCTACCAGCTGTTCTTCTACCTGCACTGAAGCACAAGTC
TATTCTTTCACCATGTCTGCAAAGTTTACTGATTTCAAGAGATAAAATTG
TTGGAAAGATGTCAGAAATTGATCAGTCTGACATGGACTGTTCTTCGAAG
GCAATTCCACAAGTTGGTTGGGCTCTTTCAAATGTTATATGCCTAGCTTC
TGGGAGTGAGAATGACTTTCTGGATTCCGGAGTGTTGAACCAAGGTCTAG
AATATGCATCCTATGTCCATGTTGTAACCATTCTTGCAGACAACTTATTG
GAATGGCTTCATAATGTTGGGTGGAATGAAAAGGGGAATCAAAATCTTGA
AGGTAATAATGAAGCTCATGTAGAGCCTGTTAGTGCCGTTATGCAGGAGA
GCGAGACAGCCTGTGGGTCATTAAAAACATCCTACATGGACCTATTTAGA
CCTGTTTGTCAGCAGTGGCATCTTAAAAAGCTTTTGAGTTTATCTGAAAG
ATATGCTCATACAGATGAGGCCAAGATCCTACCTCCAAACAGCTTAGAAT
GTTTGGGGAACTTGGAATTGCTTGATATTGCACATTTTTATTCCTACATG
CTTAGAATATTTGCTGCATTCAATCCCATGGTTGGGCCCTTGACTGTTCT
TAATATGCTATCTTTCACTCCTGGATTTCTTGGCAACCTTTGGGGAGTGC
TAGAAAGTTCCATGTTCCGTGGAAATAGTCACACCATTGGAGATAGTTAT
CATGGTACAAATAAAGTTTCAGGGAAGAAAAAAGAGGGAATTGATAAAAA
ACTAAAACAAGCCAATAAGGATGGAGTCAATAAATGGGTCAATGTATTGC
AGAAGTTCACTGGCAAATCACAGGCTGACGTTGATTTTGCAGATTCAGTT
GATGATCATCTTGTTGATGATGATTCTTTTGATGTTTGGGATATAGAGCC
TTTGAGGCATGGTCCTCAGGGTATCTCAAAAGATATGTCATGTCTACTTC
ATCTGTTCTGTGCCACCTATTCACATCTGCTATTAGTTCTTGATGACATA
GAGTTTTATGAGAAACAGGTTCCATTCACACTGGAGCAACAACGAAGAAT
TGCATCAGTGCTTAATACACTAGTCTATAATGGCCTGTCGTGTAGTGTGG
GTCAGCAGAATGGTTCCTTTATGGAGTCTGCGATCAGATGCTTGCATCTA
ATTTATGAAAGGGATTGCAGACACCAGTTCTGCCCCCCTGTTTTGTGGCT
TTCACCAGCTAGAAGGAGCCGACCTCCAATTGCTGTAGCTGCCAGAACTC
ATGAAGTTCTATCAGCTAATATCAGGCCAGAGGATGCTACCGTTGTTCAC
AGTACAGGTTCTGTAATCACCAGTATGCCACATGTATTTCCATTTGAAGA
AAGGGTTCAAATGTTTAGAGAGATTATCAATATGGATAAAGTCTCTCGGA
AAATGGCTGGTGAAGTGGCCGGACCTGGTTCACGATCAGTTGAGATAGTA
ATTCGTCGAGGTCATATTGTTGAAGATGGCTTTCGACAATTAAATTCCCT
TGGCTCAAGGTTGAAGTCATCGATTCATGTTTCATTTGTTAGTGAATGTG
GCCTTCCAGAGGCTGGTCTGGATTATGGTGGATTATCTAAAGAATTTTTA
ACCGATATATCTAAAGAAGCTTTTGCTCCTGAGTATGGGTTATTTTCCCA
AACGTCAACGTCAGACAGACTTCTAATACCTAATGCAGCTGCAAGATATC
TAGAGAATGGTATCCAGATGATTGAATTCCTTGGAAGAGTTGTTGGCAAA
GCACTCTATGAAGGAATATTACTAGATTACTCTTTTTCACATGTTTTTGT
GCAAAAGCTGTTAGGCCGATATAGCTTTCTTGATGAACTATCAACACTTG
ATCCAGAGCTCTACAGGAATCTTATGTATGTCAAGCACTATGATGGTGAT
ATTAAGGAGCTCTGTCTAGATTTCACAATTACTGAAGAATCTTTTGGTAA
ACGGCATGTTATCGAGCTTAAACCTGGTGGCAAGGATGTTTGTGTGACTA
ATGAGAACAAGATGCAGTATGTTCATGCAATGGCAGATTACAAACTCAAC
CGACAGATACTGCCCTTTTCAAATGCATTTTATAGGGGGTTAACTGATCT
TATATCTCCATCTTGGTTGAAGTTATTTAATGCTAGTGAATTTAATCAGT
TACTTTCTGGTGGAGACCATGATATTGATGTTGATGATTTAAGAAATAAC
ACACGGTATACTGGTGGTTATTCCGAGGGAAATCGAACAATTAAACTTTT
CTGGGAGGTAATGAAGGATTTTGAGCCAAAAGAACGCTGTATGCTGCTAA
AATTTGTGACCAGTTGTTCTCGTGCTCCTTTACTAGGGTTCAAATTCTTG
CAGCCATCTTTCACAATTCATAAGGTTGCAAGTGATGCTCCTCTTTGGGC
AACCATTGGAGGACCAGATGTGGAGCGGCTTCCCTCAGCTTCTACATGCT
ATAACACTCTCAAGCTTCCAACCTATAAGCGGTCAAGTACGCTGAAAGCA
AAGCTTCGTTATGCAATCAGTTCTAATGCAGGATTTGAACTTTCTTAG
back to top

protein sequence of Tc05v2_p006590.2

>Tc05v2_p006590.2 ID=Tc05v2_p006590.2|Name=Tc05v2_p006590.2|organism=Theobroma cacao|type=polypeptide|length=1166bp
MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASAAIFIQR
VWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCL
SIRRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLT
YQAQKLISLCSFVLAQCDTSHGGSQDLVVLTSLALRLVVVLTDLKSWKIV
SDDNIGNVDATVKNLVCFMGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQ
TDDKFLITASAISLAIRPFSLTTFDATCPGQFDVHSAVEQYCLFLLTIPW
LTQRLPAVLLPALKHKSILSPCLQSLLISRDKIVGKMSEIDQSDMDCSSK
AIPQVGWALSNVICLASGSENDFLDSGVLNQGLEYASYVHVVTILADNLL
EWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR
PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLDIAHFYSYM
LRIFAAFNPMVGPLTVLNMLSFTPGFLGNLWGVLESSMFRGNSHTIGDSY
HGTNKVSGKKKEGIDKKLKQANKDGVNKWVNVLQKFTGKSQADVDFADSV
DDHLVDDDSFDVWDIEPLRHGPQGISKDMSCLLHLFCATYSHLLLVLDDI
EFYEKQVPFTLEQQRRIASVLNTLVYNGLSCSVGQQNGSFMESAIRCLHL
IYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSANIRPEDATVVH
STGSVITSMPHVFPFEERVQMFREIINMDKVSRKMAGEVAGPGSRSVEIV
IRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFL
TDISKEAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMIEFLGRVVGK
ALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGD
IKELCLDFTITEESFGKRHVIELKPGGKDVCVTNENKMQYVHAMADYKLN
RQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGDHDIDVDDLRNN
TRYTGGYSEGNRTIKLFWEVMKDFEPKERCMLLKFVTSCSRAPLLGFKFL
QPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKLPTYKRSSTLKA
KLRYAISSNAGFELS*
back to top