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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 1 EST, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns |
Product | E3 ubiquitin-protein ligase UPL7, transcript variant X1 |
Note | E3 ubiquitin-protein ligase UPL7 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc05v2_t006590.2 ID=Tc05v2_t006590.2|Name=Tc05v2_t006590.2|organism=Theobroma cacao|type=mRNA|length=3498bp ATGGAGGAACCTCGGAAACATCAGGTATCGTTGAGAGGAGCAAGCGCGAA AGAGATATCGAGAGATGCGCTTCTCGAGAAAGTTTCTCAAGAAAGAGAGA ATCGCAATTATGCCAGACGAGCTGCTTCCGCTGCAATCTTTATCCAGAGA GTCTGGAGAAGCTATAACGTTACAATGAAAGTGGCTATCAAGCTTCAAGA AGAATGGGAAAGTTTTGTGAAAAATCAAGCTGAGTTGATGACTGCAAATT TAATTTCCAGCAGTGTTTTGAGGCCTTTTATTTTCTTTATTACATGTTTA TCAATTCGGCGTCGAAAGATTCTTGCCAGAGTCTCAAACTGTATGCAGAC TTGCTTTAAGATTCTCTTGGAAAGCATAAATTCAACTGATTCAAAGAAGA ATTTTTGCTCCCTGGCTGTGGGTACAATGGAAGAGAGAAGAACACTGACT TATCAAGCGCAGAAGCTGATTTCACTCTGCTCATTTGTTCTTGCACAGTG TGATACGTCACACGGAGGGAGTCAAGATCTTGTTGTTCTGACATCTCTGG CATTGCGTCTTGTTGTTGTCTTAACTGATCTGAAAAGTTGGAAGATTGTT AGTGATGACAATATTGGGAATGTAGATGCAACAGTGAAGAATTTGGTTTG TTTTATGGGAAGCTATAAAGGTGGCCTTTATGTATCTATGAGAAGATACA TAAGCAAATTGGATGTTTGTTTTTCTCCAGAAGTAAAGAATATTGTCCAG ACTGATGATAAATTCTTGATCACTGCAAGTGCAATTAGTCTGGCTATTCG GCCATTTAGTTTGACAACCTTTGATGCAACTTGTCCTGGTCAGTTCGATG TGCATTCTGCTGTTGAGCAGTACTGTTTGTTTTTACTTACAATTCCTTGG CTCACGCAACGTCTACCAGCTGTTCTTCTACCTGCACTGAAGCACAAGTC TATTCTTTCACCATGTCTGCAAAGTTTACTGATTTCAAGAGATAAAATTG TTGGAAAGATGTCAGAAATTGATCAGTCTGACATGGACTGTTCTTCGAAG GCAATTCCACAAGTTGGTTGGGCTCTTTCAAATGTTATATGCCTAGCTTC TGGGAGTGAGAATGACTTTCTGGATTCCGGAGTGTTGAACCAAGGTCTAG AATATGCATCCTATGTCCATGTTGTAACCATTCTTGCAGACAACTTATTG GAATGGCTTCATAATGTTGGGTGGAATGAAAAGGGGAATCAAAATCTTGA AGGTAATAATGAAGCTCATGTAGAGCCTGTTAGTGCCGTTATGCAGGAGA GCGAGACAGCCTGTGGGTCATTAAAAACATCCTACATGGACCTATTTAGA CCTGTTTGTCAGCAGTGGCATCTTAAAAAGCTTTTGAGTTTATCTGAAAG ATATGCTCATACAGATGAGGCCAAGATCCTACCTCCAAACAGCTTAGAAT GTTTGGGGAACTTGGAATTGCTTGATATTGCACATTTTTATTCCTACATG CTTAGAATATTTGCTGCATTCAATCCCATGGTTGGGCCCTTGACTGTTCT TAATATGCTATCTTTCACTCCTGGATTTCTTGGCAACCTTTGGGGAGTGC TAGAAAGTTCCATGTTCCGTGGAAATAGTCACACCATTGGAGATAGTTAT CATGGTACAAATAAAGTTTCAGGGAAGAAAAAAGAGGGAATTGATAAAAA ACTAAAACAAGCCAATAAGGATGGAGTCAATAAATGGGTCAATGTATTGC AGAAGTTCACTGGCAAATCACAGGCTGACGTTGATTTTGCAGATTCAGTT GATGATCATCTTGTTGATGATGATTCTTTTGATGTTTGGGATATAGAGCC TTTGAGGCATGGTCCTCAGGGTATCTCAAAAGATATGTCATGTCTACTTC ATCTGTTCTGTGCCACCTATTCACATCTGCTATTAGTTCTTGATGACATA GAGTTTTATGAGAAACAGGTTCCATTCACACTGGAGCAACAACGAAGAAT TGCATCAGTGCTTAATACACTAGTCTATAATGGCCTGTCGTGTAGTGTGG GTCAGCAGAATGGTTCCTTTATGGAGTCTGCGATCAGATGCTTGCATCTA ATTTATGAAAGGGATTGCAGACACCAGTTCTGCCCCCCTGTTTTGTGGCT TTCACCAGCTAGAAGGAGCCGACCTCCAATTGCTGTAGCTGCCAGAACTC ATGAAGTTCTATCAGCTAATATCAGGCCAGAGGATGCTACCGTTGTTCAC AGTACAGGTTCTGTAATCACCAGTATGCCACATGTATTTCCATTTGAAGA AAGGGTTCAAATGTTTAGAGAGATTATCAATATGGATAAAGTCTCTCGGA AAATGGCTGGTGAAGTGGCCGGACCTGGTTCACGATCAGTTGAGATAGTA ATTCGTCGAGGTCATATTGTTGAAGATGGCTTTCGACAATTAAATTCCCT TGGCTCAAGGTTGAAGTCATCGATTCATGTTTCATTTGTTAGTGAATGTG GCCTTCCAGAGGCTGGTCTGGATTATGGTGGATTATCTAAAGAATTTTTA ACCGATATATCTAAAGAAGCTTTTGCTCCTGAGTATGGGTTATTTTCCCA AACGTCAACGTCAGACAGACTTCTAATACCTAATGCAGCTGCAAGATATC TAGAGAATGGTATCCAGATGATTGAATTCCTTGGAAGAGTTGTTGGCAAA GCACTCTATGAAGGAATATTACTAGATTACTCTTTTTCACATGTTTTTGT GCAAAAGCTGTTAGGCCGATATAGCTTTCTTGATGAACTATCAACACTTG ATCCAGAGCTCTACAGGAATCTTATGTATGTCAAGCACTATGATGGTGAT ATTAAGGAGCTCTGTCTAGATTTCACAATTACTGAAGAATCTTTTGGTAA ACGGCATGTTATCGAGCTTAAACCTGGTGGCAAGGATGTTTGTGTGACTA ATGAGAACAAGATGCAGTATGTTCATGCAATGGCAGATTACAAACTCAAC CGACAGATACTGCCCTTTTCAAATGCATTTTATAGGGGGTTAACTGATCT TATATCTCCATCTTGGTTGAAGTTATTTAATGCTAGTGAATTTAATCAGT TACTTTCTGGTGGAGACCATGATATTGATGTTGATGATTTAAGAAATAAC ACACGGTATACTGGTGGTTATTCCGAGGGAAATCGAACAATTAAACTTTT CTGGGAGGTAATGAAGGATTTTGAGCCAAAAGAACGCTGTATGCTGCTAA AATTTGTGACCAGTTGTTCTCGTGCTCCTTTACTAGGGTTCAAATTCTTG CAGCCATCTTTCACAATTCATAAGGTTGCAAGTGATGCTCCTCTTTGGGC AACCATTGGAGGACCAGATGTGGAGCGGCTTCCCTCAGCTTCTACATGCT ATAACACTCTCAAGCTTCCAACCTATAAGCGGTCAAGTACGCTGAAAGCA AAGCTTCGTTATGCAATCAGTTCTAATGCAGGATTTGAACTTTCTTAG back to topprotein sequence of Tc05v2_p006590.2 >Tc05v2_p006590.2 ID=Tc05v2_p006590.2|Name=Tc05v2_p006590.2|organism=Theobroma cacao|type=polypeptide|length=1166bp
MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASAAIFIQR VWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCL SIRRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLT YQAQKLISLCSFVLAQCDTSHGGSQDLVVLTSLALRLVVVLTDLKSWKIV SDDNIGNVDATVKNLVCFMGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQ TDDKFLITASAISLAIRPFSLTTFDATCPGQFDVHSAVEQYCLFLLTIPW LTQRLPAVLLPALKHKSILSPCLQSLLISRDKIVGKMSEIDQSDMDCSSK AIPQVGWALSNVICLASGSENDFLDSGVLNQGLEYASYVHVVTILADNLL EWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLDIAHFYSYM LRIFAAFNPMVGPLTVLNMLSFTPGFLGNLWGVLESSMFRGNSHTIGDSY HGTNKVSGKKKEGIDKKLKQANKDGVNKWVNVLQKFTGKSQADVDFADSV DDHLVDDDSFDVWDIEPLRHGPQGISKDMSCLLHLFCATYSHLLLVLDDI EFYEKQVPFTLEQQRRIASVLNTLVYNGLSCSVGQQNGSFMESAIRCLHL IYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSANIRPEDATVVH STGSVITSMPHVFPFEERVQMFREIINMDKVSRKMAGEVAGPGSRSVEIV IRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFL TDISKEAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMIEFLGRVVGK ALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGD IKELCLDFTITEESFGKRHVIELKPGGKDVCVTNENKMQYVHAMADYKLN RQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGDHDIDVDDLRNN TRYTGGYSEGNRTIKLFWEVMKDFEPKERCMLLKFVTSCSRAPLLGFKFL QPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKLPTYKRSSTLKA KLRYAISSNAGFELS* back to top
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