Tc05v2_t005320.2

Overview
NameTc05v2_t005320.2
Unique NameTc05v2_t005320.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2046
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 79 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productputative cyclic nucleotide-gated ion channel 15, transcript variant X5
NotePutative cyclic nucleotide-gated ion channel 15
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597966
GenbankXM_007027283.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g005320Tc05v2_g005320Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p005320.2Tc05v2_p005320.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto263415auto263415Theobroma cacaoexon
exon-auto263416auto263416Theobroma cacaoexon
exon-auto263417auto263417Theobroma cacaoexon
exon-auto263418auto263418Theobroma cacaoexon
exon-auto263419auto263419Theobroma cacaoexon
exon-auto263420auto263420Theobroma cacaoexon
exon-auto263421auto263421Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto263422auto263422Theobroma cacaoCDS
CDS-auto263423auto263423Theobroma cacaoCDS
CDS-auto263424auto263424Theobroma cacaoCDS
CDS-auto263425auto263425Theobroma cacaoCDS
CDS-auto263426auto263426Theobroma cacaoCDS
CDS-auto263427auto263427Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t005320.2 ID=Tc05v2_t005320.2|Name=Tc05v2_t005320.2|organism=Theobroma cacao|type=mRNA|length=2046bp
ATGAGCAAGATGAATTGCAATCAAGTGCCTGAGCTGCGAACCAAAACGTT
TGAGAAGACTGCAATTGGCAAGACTTTTCACAAGAAAGAACTCTCCAGAG
TATTTTCAGAAGACTACGAGGTAGTGGAGAAGACAATATTGGATCCTCGA
GGGCCTGACATAAACAGATGGAACAAGCTTTTCTTAGTAGCTTGTCTGAT
ATCTCTTTTTGTAGACCCTTTGTTCTTTTATCTGCCACAGGCTAAGAAGA
GCATGTGCATGACTGTTTCTCTACCTCTTGAAATTGATCTCACAGTTACG
CGATCAGTAGTTGATGCTTTTTACATTATTCAGATTTTTGTTCGATTTCG
AACAGCTTATGTGGCTCCATCCTCTCGTGTGTTTGGGAGAGGAGAGCTAG
TCATAGACCCTTCAAAGATTGCTTCAAGGTACCTGCACAAAGATTTCTGG
CTTGATATAATCGCTGCACAACCCCTTCCACAGGTATTGGTTTGGGCTGT
AATCCCCAAATTAAGGGGTTCATCCATGGTTACTACAAAAAATATTGTTC
GCCTAATTATCATATTCCAGTATCTCCTGAGGCTATACCTAATCTTTCCA
CTTTCTTCTCAAATTATCAAGACTTCAGGGGTTGTGACAGAAACAGCATG
GGCAGGGGCTGCTTATAACCTGATGCTCTATATGCTGGCAAGTCATGTTT
TAGGAGCCTCTTGGTACCTCTTATCACTTGAACGGCAAGAAGAATGTTGG
AGAAAAGTTTGTAGTCTTCCCGTCATAGATTGCCGCTATGAGTTTTTTGA
CTGCAGATTTGTTGGTGATCCTGCCAGAGCTGCTTGGTTCAATTCAAGCA
ATATCTCAGGCCTATGTGATCCAAGAAGTGATTTCTTCCAGTTTGGCATT
TATGCTGATGCATTACAATTCGGAGTCACATCATCAGGATTCTTCAGGAA
GTACTTTTACTGCCTTTGGTGGGGGCTGAGAAATTTGAGTTCATTGGGAC
AGGGTCTCTTCACAAGCACTTATGTTGGAGAAATAATATTTGCCATCATC
ATTGCTATCGTTGGATTAGTGCTTTTTGCACTTCTCATTGGAAATATGCA
AACGTATCTCCAATCTACTACTGTTCGACTGGAAGAATGGAGGATTAGGA
GGACTGATACGGAACAATGGATGCATCACAGGCAGCTTCCTCATGAACTA
AAGCAGAGTGTTCGAAGGTATGATCAATACAAGTGGGTCGCAACTCGGGG
TGTTGATGAGGAAGCCATCCTGAAAAGTCTCCCTATGGATCTTCGTCGAG
ACATCAAGCGCCACCTCTGCGTTGATTTAGTTCGACAAGTGCCACTCTTT
GATCTGATGGATGATCGGATGCTAGATGCAATTTGTGAAAGGCTTAAACC
ATGTCTCCGTACCCCATCCACTTGCCTAGTTCGTGAAGGTGATCCTGTAA
ATGAGATGCTTTTCATTGTCCGAGGCCACCTAGATTCCTTCACTACCAAC
GGTGGACGCACAGGATTCTTCAATTCAAGCCGGATCGGTCCAGGTGATTT
CTGTGGTGAGGAATTGTTAACTTGGGCCTTGGACCCTCGTCCAAATATCG
TCCTTCCATCGTCTACACGCACCGTTAAGGCTATCACTGAAGTGGAAGCT
TTTGCTCTTGTTTCTGAGGACTTGAAATTTGTTGCCGCCCAGTTTCGCAG
ACTGCATAGCAAACAACTTAGGCACACATTCAGATTTCACTCGCATCAAT
GGAGGACATGGGCTGCATGCTTCATACAAGCAGCTTGGTTTCGCTATAAG
AGACGGAAAGGGGTAGCTGAGCTCAAGAAATGGGAGAGTATGGCAGCCAG
TTCACCTGAACAAGCAACAGAACAAACGGGTGCACCAGCACTTCCTCCAG
TAGCCTCAGGCATTGCCTCATACGCAGCAAAACTGGCCGCAAGCACCAGA
TCAAGAGGTGGGAGTCGGCGGTGCGGAACCGACTTTGACATACTAGGCTC
TTTGCAAAAGCCGAATGAACCTGATTTTACAGTTGAAGATAGATGA
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protein sequence of Tc05v2_p005320.2

>Tc05v2_p005320.2 ID=Tc05v2_p005320.2|Name=Tc05v2_p005320.2|organism=Theobroma cacao|type=polypeptide|length=682bp
MSKMNCNQVPELRTKTFEKTAIGKTFHKKELSRVFSEDYEVVEKTILDPR
GPDINRWNKLFLVACLISLFVDPLFFYLPQAKKSMCMTVSLPLEIDLTVT
RSVVDAFYIIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDFW
LDIIAAQPLPQVLVWAVIPKLRGSSMVTTKNIVRLIIIFQYLLRLYLIFP
LSSQIIKTSGVVTETAWAGAAYNLMLYMLASHVLGASWYLLSLERQEECW
RKVCSLPVIDCRYEFFDCRFVGDPARAAWFNSSNISGLCDPRSDFFQFGI
YADALQFGVTSSGFFRKYFYCLWWGLRNLSSLGQGLFTSTYVGEIIFAII
IAIVGLVLFALLIGNMQTYLQSTTVRLEEWRIRRTDTEQWMHHRQLPHEL
KQSVRRYDQYKWVATRGVDEEAILKSLPMDLRRDIKRHLCVDLVRQVPLF
DLMDDRMLDAICERLKPCLRTPSTCLVREGDPVNEMLFIVRGHLDSFTTN
GGRTGFFNSSRIGPGDFCGEELLTWALDPRPNIVLPSSTRTVKAITEVEA
FALVSEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYK
RRKGVAELKKWESMAASSPEQATEQTGAPALPPVASGIASYAAKLAASTR
SRGGSRRCGTDFDILGSLQKPNEPDFTVEDR*
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