Tc05v2_t004870.1

Overview
NameTc05v2_t004870.1
Unique NameTc05v2_t004870.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length705
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productlipid phosphate phosphatase gamma, chloroplastic, transcript variant X1
NoteLipid phosphate phosphatase gamma, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597913
GenbankXM_007027212.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g004870Tc05v2_g004870Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p004870.1Tc05v2_p004870.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto262678auto262678Theobroma cacaoexon
exon-auto262679auto262679Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto262680auto262680Theobroma cacaoCDS
CDS-auto262681auto262681Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t004870.1 ID=Tc05v2_t004870.1|Name=Tc05v2_t004870.1|organism=Theobroma cacao|type=mRNA|length=705bp
ATGACAACACACCATCCATTAAAAGCGGTGACTTTAACCCATGTAAGGTA
TCAAAGAGGTGACCGACTAGGCCATTTCTTAGCCTGGGTTTCTTTAGTCC
CCGTTTTCATTTCCCTTGGTGGCTTTGTTTCTCATTTTATCTTCCGTAGA
GAGCTTCAAGGAATGTTCTTTGCGTTAGGCCTGATAGTATCTCAGTTCAT
TAATGAGCTGATAAAAAAATCTGTTCAACAAGCCAGGCCTGAAACCTGTG
CTCTTTTAGAAATGTGTGATTCACATGGTTGGCCTTCGAGTCACTCTCAG
TACATGTTCTTTTTTGCTGTTTATTTCACCCTTTTGACTTGTAAAGGGAT
TGGTGGGATTTGGAATGTTAGAACCAAATGGGCTGCTTTGTTTTTGCCTT
GGTCTTTGGCTGTTTTGACTATGTATTCCAGGGTTTATTTGGGCTACCAT
ACTGTGGCTCAGGTTTTTGCTGGAGCTGCTTTGGGGATTTTTCTTGGTGG
GGTTTGGTTTTGGCTGGTGAATTCTAAGCTTTTCTGTTATTTTCCTCTGA
TTGAGGAGAGTGCCTTTGGAAGGTATTTTTATGCTAAGGATACTTCTCAT
ATATCAGATGTCTTGAAGTTTGAGTATGATAATGCCAGGGCTGCTAGGAA
AGGCCAGTATCTTCACCACTGTGTTTCAAGATTCTGCTTCTATGCCTATA
AATGA
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protein sequence of Tc05v2_p004870.1

>Tc05v2_p004870.1 ID=Tc05v2_p004870.1|Name=Tc05v2_p004870.1|organism=Theobroma cacao|type=polypeptide|length=235bp
MTTHHPLKAVTLTHVRYQRGDRLGHFLAWVSLVPVFISLGGFVSHFIFRR
ELQGMFFALGLIVSQFINELIKKSVQQARPETCALLEMCDSHGWPSSHSQ
YMFFFAVYFTLLTCKGIGGIWNVRTKWAALFLPWSLAVLTMYSRVYLGYH
TVAQVFAGAALGIFLGGVWFWLVNSKLFCYFPLIEESAFGRYFYAKDTSH
ISDVLKFEYDNARAARKGQYLHHCVSRFCFYAYK*
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