Tc05v2_t004200.2

Overview
NameTc05v2_t004200.2
Unique NameTc05v2_t004200.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1128
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable pectate lyase 4, transcript variant X1
NotePectate lyase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597629
GenbankXM_018122289.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g004200Tc05v2_g004200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p004200.2Tc05v2_p004200.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto261142auto261142Theobroma cacaoexon
exon-auto261143auto261143Theobroma cacaoexon
exon-auto261144auto261144Theobroma cacaoexon
exon-auto261145auto261145Theobroma cacaoexon
exon-auto261146auto261146Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto261147auto261147Theobroma cacaoCDS
CDS-auto261148auto261148Theobroma cacaoCDS
CDS-auto261149auto261149Theobroma cacaoCDS
CDS-auto261150auto261150Theobroma cacaoCDS
CDS-auto261151auto261151Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t004200.2 ID=Tc05v2_t004200.2|Name=Tc05v2_t004200.2|organism=Theobroma cacao|type=mRNA|length=1128bp
ATGGGGAACGCTCACGGCCACCGCAAGAACCGTAACAACCGCGAGCACTC
TGGCTCTTACCCAACGCCTGTCCCGCCTTATTATAAATACGGTCCGCCTC
CGCAGCCCCAAGTTCCAAGCCCCACGACCCAACCCCAGATGGCTCTGTCT
TTGCCTTATACGAATGTCGATTCTAGTCTTCGAGCCCTTGCCGGCCAAGC
TGAGGGCTTTGGTCGCTTCGCCATTGGTGGCCTCCATGGCCCTCTCTACC
ATGTCACTACTTTATCAGATGATGGGCCCGGATCATTGCGTGATGGTTGC
CGTAGAAAAGAACCCCTTTGGATTGTCTTTGAAGTTTCAGGAACCATTCA
TCTTTCATCTTACTTGAGTGTGTCATCTTATAAGACCATTGATGGACGTG
GCCAAAGGATAAAACTCACCGGAAAGGGTTTAAGGCTGAAGGAATGTGAA
CATGTTATAATATGCAATTTGGAGTTTGAAGGTGGTAGAGGACCGGATGT
TGATGGGATTCAAATAAAACCTAACTCCAAGCACATATGGATAGACCGTT
GCAGCCTTCGTGATTATGATGATGGATTGATTGATATCACCCGAGAAAGC
ACAGATATTACTGTATCTAGGTGTCACTTTTCACAGCATGACAAGACGAT
ACTCATTGGAGCAGACCCCTCTCATGTCGGTGATAGATGTATCCGGGTGA
CCATTCACCATTGCTTTTTTGATGGGACTCGGCAACGACATCCCCGTGTT
AGATTTGGGAAGGTACATTTGTACAATAATTACACTAGACACTGGGGCAT
TTATGCTGTTTGTGCCAGTGTGGAATCACAGATATACTCTCAGTGCAATA
TATATGAAGCAGGGCAGAAGAAGGTGGCCTTCAAGTATCTTACCGAAAAG
GCTACTGACAAAGAAGAGGCTTGCAGTGGCTGCATAAGGTCCGAAGGGGA
TTTGTTTACAGCTGGAACCCAAGCAGGCCTGTTGACTGAGAATGCTAGGT
CCAACTTGTTTCATCCAAGTGAATACTACCCTACATGGACAGTGGAAGCT
CCAACAGATACCCTTAAACATGTTATTCAGCACTGTACAGGATGGCAGTG
TGTCCCTCGACCAACTGAAGCGGCCTAG
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protein sequence of Tc05v2_p004200.2

>Tc05v2_p004200.2 ID=Tc05v2_p004200.2|Name=Tc05v2_p004200.2|organism=Theobroma cacao|type=polypeptide|length=376bp
MGNAHGHRKNRNNREHSGSYPTPVPPYYKYGPPPQPQVPSPTTQPQMALS
LPYTNVDSSLRALAGQAEGFGRFAIGGLHGPLYHVTTLSDDGPGSLRDGC
RRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECE
HVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRES
TDITVSRCHFSQHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRV
RFGKVHLYNNYTRHWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEK
ATDKEEACSGCIRSEGDLFTAGTQAGLLTENARSNLFHPSEYYPTWTVEA
PTDTLKHVIQHCTGWQCVPRPTEAA*
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