Tc05v2_t004040.1

Overview
NameTc05v2_t004040.1
Unique NameTc05v2_t004040.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1086
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productdiaminopimelate epimerase, chloroplastic
NoteDiaminopimelate epimerase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597822
GenbankXM_007027053.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g004040Tc05v2_g004040Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p004040.1Tc05v2_p004040.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto260920auto260920Theobroma cacaoexon
exon-auto260921auto260921Theobroma cacaoexon
exon-auto260922auto260922Theobroma cacaoexon
exon-auto260923auto260923Theobroma cacaoexon
exon-auto260924auto260924Theobroma cacaoexon
exon-auto260925auto260925Theobroma cacaoexon
exon-auto260926auto260926Theobroma cacaoexon
exon-auto260927auto260927Theobroma cacaoexon
exon-auto260928auto260928Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto260929auto260929Theobroma cacaoCDS
CDS-auto260930auto260930Theobroma cacaoCDS
CDS-auto260931auto260931Theobroma cacaoCDS
CDS-auto260932auto260932Theobroma cacaoCDS
CDS-auto260933auto260933Theobroma cacaoCDS
CDS-auto260934auto260934Theobroma cacaoCDS
CDS-auto260935auto260935Theobroma cacaoCDS
CDS-auto260936auto260936Theobroma cacaoCDS
CDS-auto260937auto260937Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t004040.1 ID=Tc05v2_t004040.1|Name=Tc05v2_t004040.1|organism=Theobroma cacao|type=mRNA|length=1086bp
ATGGCCATCGCCGCCACCATTTCCCTCTCTCTCCCGCTCCAAACCCGCCG
TTTCTCCGTAGCCGGCGCCGCTCCTTTTCGATCAACTCCTTCTCTTCATT
TCGACTGTCTCCTTTCCAACCTCTCTCTTAAAAACCCTAGCTTTCGAGTC
TCCGCATCTTCCATGAGTATCGGAACCCCCGACAAAATCTCCACGACGTC
ATTTCTTGACCGAAGAGAAAGTGGATTCGTTCACTTCGTTAAATACCACG
GCCTCGGGAACGACTTCATTTTGGTTGATAATCGAGATTCGACGGAGCCG
AGGATTACGCCGGAGCAGGCGGTGAAGTTGTGCGATAGGAACTTTGGTGT
CGGAGCTGATGGAGTGATTTTTGCGATGCCGGGAACCAACGGCACTGATT
ATACTATGAGAATCTTTAATTCTGATGGTAGCGAGCCTGAGATGTGTGGT
AATGGGGTGCGGTGCTTTGCCAGATTCATTGCTGAGCTCGAGAATTTACA
CGGGAAGCAAAGTTTTACTGTGTATACTGGGGCTGGGTTAATTGTTCCTG
AAATTCAAGATGATGGGAAGGTTAAAGTTGATATGGGCGAACCAATTCTT
AAAGCATCAGATGTTCCTACAAAATTACGAGCAAATAAAGATCAATCTGT
TGTTAAATCAGATCTTAATGTAGATGGAGTGATTTGGAATGTGACTTGTG
TTAGTATGGGGAATCCCCACTGTGTAACCTTTGGCACCAAAGGAAGCCAG
AACTTGACAGTCGATGAGCTAAATTTAGCAGCAGTTGGTTCTAAATTTGA
GCATCATGAAATGTTCCCAGCTAGGACTAACACAGAATTTGTGGAAGTTT
TCTCCCGTTCACACTTGAAAATGCGCGTTTGGGAGCGTGGAGCAGGAGCA
ACACTGGCTTGTGGAACTGGAGCTTGCGCTGTGGTCGTTGCAGCTGTTCT
AGAAGGACGTGCTGGGAGGAGTTGCACGGTCGATTTGCCTGGAGGCCCGT
TGGAGATTGAATGGAGGGAGGAAGACAATCATGTGTACATGACAGGCCCA
GCTGAAGTAGTGTTTTACGGATCAGTGCCACTGTGA
back to top

protein sequence of Tc05v2_p004040.1

>Tc05v2_p004040.1 ID=Tc05v2_p004040.1|Name=Tc05v2_p004040.1|organism=Theobroma cacao|type=polypeptide|length=362bp
MAIAATISLSLPLQTRRFSVAGAAPFRSTPSLHFDCLLSNLSLKNPSFRV
SASSMSIGTPDKISTTSFLDRRESGFVHFVKYHGLGNDFILVDNRDSTEP
RITPEQAVKLCDRNFGVGADGVIFAMPGTNGTDYTMRIFNSDGSEPEMCG
NGVRCFARFIAELENLHGKQSFTVYTGAGLIVPEIQDDGKVKVDMGEPIL
KASDVPTKLRANKDQSVVKSDLNVDGVIWNVTCVSMGNPHCVTFGTKGSQ
NLTVDELNLAAVGSKFEHHEMFPARTNTEFVEVFSRSHLKMRVWERGAGA
TLACGTGACAVVVAAVLEGRAGRSCTVDLPGGPLEIEWREEDNHVYMTGP
AEVVFYGSVPL*
back to top