Tc05v2_t002790.2

Overview
NameTc05v2_t002790.2
Unique NameTc05v2_t002790.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1851
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productdelta-1-pyrroline-5-carboxylate synthase, transcript variant X2
NoteDelta-1-pyrroline-5-carboxylate synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597690
GenbankXM_007026850.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g002790Tc05v2_g002790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p002790.2Tc05v2_p002790.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto258537auto258537Theobroma cacaoexon
exon-auto258538auto258538Theobroma cacaoexon
exon-auto258539auto258539Theobroma cacaoexon
exon-auto258540auto258540Theobroma cacaoexon
exon-auto258541auto258541Theobroma cacaoexon
exon-auto258542auto258542Theobroma cacaoexon
exon-auto258543auto258543Theobroma cacaoexon
exon-auto258544auto258544Theobroma cacaoexon
exon-auto258545auto258545Theobroma cacaoexon
exon-auto258546auto258546Theobroma cacaoexon
exon-auto258547auto258547Theobroma cacaoexon
exon-auto258548auto258548Theobroma cacaoexon
exon-auto258549auto258549Theobroma cacaoexon
exon-auto258550auto258550Theobroma cacaoexon
exon-auto258551auto258551Theobroma cacaoexon
exon-auto258552auto258552Theobroma cacaoexon
exon-auto258553auto258553Theobroma cacaoexon
exon-auto258554auto258554Theobroma cacaoexon
exon-auto258555auto258555Theobroma cacaoexon
exon-auto258556auto258556Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto258557auto258557Theobroma cacaoCDS
CDS-auto258558auto258558Theobroma cacaoCDS
CDS-auto258559auto258559Theobroma cacaoCDS
CDS-auto258560auto258560Theobroma cacaoCDS
CDS-auto258561auto258561Theobroma cacaoCDS
CDS-auto258562auto258562Theobroma cacaoCDS
CDS-auto258563auto258563Theobroma cacaoCDS
CDS-auto258564auto258564Theobroma cacaoCDS
CDS-auto258565auto258565Theobroma cacaoCDS
CDS-auto258566auto258566Theobroma cacaoCDS
CDS-auto258567auto258567Theobroma cacaoCDS
CDS-auto258568auto258568Theobroma cacaoCDS
CDS-auto258569auto258569Theobroma cacaoCDS
CDS-auto258570auto258570Theobroma cacaoCDS
CDS-auto258571auto258571Theobroma cacaoCDS
CDS-auto258572auto258572Theobroma cacaoCDS
CDS-auto258573auto258573Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t002790.2 ID=Tc05v2_t002790.2|Name=Tc05v2_t002790.2|organism=Theobroma cacao|type=mRNA|length=1851bp
ATGGCTCTTTACGACACCTTGTTTAGCCAGCTTGATGTCACTTCGTCACA
ACATCTCGTGACGGATAGTGATTTTAGGAGTGTTAGTTTCAGAAAGCAAC
TCTCTGAAACAGTGCAATCATTACTAGCTTTGAAAGTTATTCCTATTTTC
AATGAGAATGATGCAGTCAGTACTCGAAGAGCGCCTTATCAGGATTCTTC
TGGGATATTCTGGGACAATGACAGCCTGGCAGGTCTCTTAGCTCTGGAAC
TGCAAGCTGATCTCCTTGTTTTGTTGAGTGATGTGGATGGCCTCTATAGT
GGACCACCAAGTGATCCAAACTCAAAGCTGATCCATACGTATATAAAAGA
AAAACATCAAGGAGAAATAACGTTTGGAGACAAGTCCAGGCTGGGTAGAG
GGGGTATGACTGCAAAGGTTAATGCTGCTCTCTGTGCAGTTTTTGCTGGT
ATCCCTGTTGTTATTACTAGTGGCTATGCCACTGACAACATTATAAAGGT
ACTCCAAGGAAAGCGAATTGGAACCCTATTTCATCAAGATGCACACTTAT
GGACATCAGTTAAAGAAGTTGGTGCACGTGAGATGGCAGTTGCAGCACGG
GATTGTTCTAGACGACTTCAGGCACTGCACTCTGAGGATAGGAGGAAAAT
TTTGCTGGACATAGCTGATGCCCTTGAGGCGAATGAAAGTTTGATTAAGG
TTGAAAACGAAGCTGATGTTGCAGCTGCCCAGGATGCTGGATATGAGACC
TCACTAATATCTCGTTTGGCTTTGAAGCCTGGGAAGATAGCTGGTCTTGC
AAAATCCATTCGTGTACTTGCTGACATGGAAGAGCCTATTGGTCGTGTTT
TAAAGAGAACAGAGCTTGCAGATGGACTCATCTTGGAGAAAACATCATGT
CCTCTTGGTGTCTTGCTGATTGTATTTGAGTCTCGACCTGATGCCCTTGT
TCAGATAGCTTCACTAGCCATTCGAAGTGGGAATGGCCTACTGCTGAAAG
GTGGAAAAGAAGCTAAGCGGTCAAATGCAATCTTGCACAAGGTCATTACT
TCGGCCATCCCAAATAATATTGGAGATAAACTTATTGGACTTGTGGCTTC
AAGAGAGGATATTCCTGATTTACTTAAGCTTGATGATGTGATAGATCTTG
TGATCCCCAGAGGCAGCAATAAGCTAGTTTCTCAAATTAAGAATTCAACA
AAAATTCCTGTTCTTGGTCATGCTGATGGAATTTGTCATGTTTATGTTGA
CAAATCAGCTAAGGCGGATATGGCCAAGCAAATTGTTCTGGATGCAAAGA
TAGATTATCCTGCAGCTTGTAATGCTATGGAAACACTTCTAGTACACAAG
GATTTGTCGAATAATGGTTTGCTCAATGAGCTTATTGTGGAACTCCGGCA
TGAAGGTGTTATCCTGTATGGTGGACCAAGAGCGTCTTCTTTATTAAATA
TTCCAGAGGTGCATTCATTTCATCATGAGTACAATTCAATGGCTTTCACA
ATTGAAATTGTGGATGATGTGCAGGCTGCCATTGACCATATACATCAACA
TGGAAGTTCTCATACTGATTGCATTGTCACAGAAAATCATGAGGTTGCTG
AAATTTTCTTAAATAGAGTCGACAGTGCTGCAGTATTTCATAATGCAAGC
ACCCGATTTTGTGATGGAGCAAGATTTGGACTTGGTGCTGAGGTTGGGAT
AAGTACTAGCCGGATCCATGCCCGAGGTCCTGTCGGAGTTGAAGGATTGT
TAACAACTCGATGGATTTTGAGAGGGAGTGGCCAGGTGGTTGATGGAGAC
AAAGGGGTTATTTACAGCCACAAGGATCTTCCCCTGCAACTTCAATTATA
G
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protein sequence of Tc05v2_p002790.2

>Tc05v2_p002790.2 ID=Tc05v2_p002790.2|Name=Tc05v2_p002790.2|organism=Theobroma cacao|type=polypeptide|length=617bp
MALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIF
NENDAVSTRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYS
GPPSDPNSKLIHTYIKEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAG
IPVVITSGYATDNIIKVLQGKRIGTLFHQDAHLWTSVKEVGAREMAVAAR
DCSRRLQALHSEDRRKILLDIADALEANESLIKVENEADVAAAQDAGYET
SLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTELADGLILEKTSC
PLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIT
SAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNST
KIPVLGHADGICHVYVDKSAKADMAKQIVLDAKIDYPAACNAMETLLVHK
DLSNNGLLNELIVELRHEGVILYGGPRASSLLNIPEVHSFHHEYNSMAFT
IEIVDDVQAAIDHIHQHGSSHTDCIVTENHEVAEIFLNRVDSAAVFHNAS
TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGSGQVVDGD
KGVIYSHKDLPLQLQL*
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