Tc05v2_t002700.4

Overview
NameTc05v2_t002700.4
Unique NameTc05v2_t002700.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2193
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Productserine/threonine-protein kinase ATG1c, transcript variant X1
NoteSerine/threonine-protein kinase ATG1c
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597680
GenbankXM_018121812.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g002700Tc05v2_g002700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p002700.4Tc05v2_p002700.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto258389auto258389Theobroma cacaoexon
exon-auto258390auto258390Theobroma cacaoexon
exon-auto258391auto258391Theobroma cacaoexon
exon-auto258392auto258392Theobroma cacaoexon
exon-auto258393auto258393Theobroma cacaoexon
exon-auto258394auto258394Theobroma cacaoexon
exon-auto258395auto258395Theobroma cacaoexon
exon-auto258396auto258396Theobroma cacaoexon
exon-auto258397auto258397Theobroma cacaoexon
exon-auto258398auto258398Theobroma cacaoexon
exon-auto258399auto258399Theobroma cacaoexon
exon-auto258400auto258400Theobroma cacaoexon
exon-auto258401auto258401Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto258402auto258402Theobroma cacaoCDS
CDS-auto258403auto258403Theobroma cacaoCDS
CDS-auto258404auto258404Theobroma cacaoCDS
CDS-auto258405auto258405Theobroma cacaoCDS
CDS-auto258406auto258406Theobroma cacaoCDS
CDS-auto258407auto258407Theobroma cacaoCDS
CDS-auto258408auto258408Theobroma cacaoCDS
CDS-auto258409auto258409Theobroma cacaoCDS
CDS-auto258410auto258410Theobroma cacaoCDS
CDS-auto258411auto258411Theobroma cacaoCDS
CDS-auto258412auto258412Theobroma cacaoCDS
CDS-auto258413auto258413Theobroma cacaoCDS
CDS-auto258414auto258414Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t002700.4 ID=Tc05v2_t002700.4|Name=Tc05v2_t002700.4|organism=Theobroma cacao|type=mRNA|length=2193bp
ATGGCGCAAGCGACGGGGAGGGAAAGAGTGGTAGGGAACTATATAGTAGG
CCGGCAAATCGGTTCGGGTTCGTTCTCGGTTGTTTGGCATGCGAGGCACC
GAGTTCATGGAACCGAAGTGGCGATAAAGGAGATCGCAATGGGTCGACTC
AATAAGAAGTTGCAGGATAGTTTGATGTCGGAGATCTTTATTTTGAGGAG
AATTAATCATCCTAATATTATTCGCATGCATGATATTATAGAGGTTCCTG
GAAAGATACATCTTGTATTGGAGTACTGCAAGGGGGGCGATCTTTCTATG
TATATTACACGCCATGGAAGTGTCTCTGAGGCAACTGCAAAGCATTTCAT
GCAGCAGCTAGCGGCTGGCCTACAAGTTCTCCGTGACAATAATCTTATAC
ATCGGGATCTAAAGCCTCAGAATCTTCTATTATCAAGAAATGATAGCAAT
GCAGTTTTAAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAG
GGGGCTTGCTGAAACATTGTGTGGTTCACCGCTATACATGGCTCCAGAGA
TAATGCAGCTGCAGAAGTATGATGCAAAGGCAGATCTCTGGAGTGTCGGT
GCTATTTTATTTCAGCTCGTTACTGGGAAAACTCCATTCACTGGAAACAA
TCAAATACAGTTACTCCAGAACATTGTGAAATCAACCGAATTGCATTTTC
CTGTGGAGAACAATTATTTGACTGCTGATTGCAAAGATTTATGTCGAAAA
TTGCTTCGACGTAATCCAGTGGAACGTTTAACATTTGAAGAGTTCTTTAA
CCACCCATTTCTTTCTCAGGGCCAACCAGATGAGTCATTGAGGAGTCAGA
GATTTTCAAGAACAGTGGCTGGTTATCCTCTGTCTGAAAGCAATCCTGTA
AGGAATACTGAGGACAGCTTTCAGGAGGACTGTCTCCCTTTCTTTCTGGA
TGATGATTCTAGTGGTCCTGAAGGGAGCCCTTCCTCTGCAATGAAGAGGT
CCTCAATGAAATTTGCTTATGGATTTTCTCCTGATGCAAAAGATGCTAGT
GAAGTAACATCTAATCCTTTGAATAAAGTGGGTTTTACTTCCAAATACAG
TGGTACAAGACATAAACCAGAAAATACTAGTTTTAGGCTTGAAAGTCGCA
AGGTTCCAGGTGAAACTCTGCATGAACCTCAGAAATCCATGGATCAAAGA
TATGTGAATACTGGTTCAAGAGGTACCAGCAATCTTATTGGTGACTCACT
GGAGTTGATCGACCAAGATTATGTTCTTGTGTCTGGACCTCCCATGGATG
TGTCATGTTCTTCAGCTAGCACTTCCAAGCCAAACAATATCCCATACAAA
TCAGAGAGTCCACCTTTAATCCCCTTTACAAATAACAGCACATCAACTGC
CCCTGTGCCTATTGTTGATGCCACCAACATTAACATCTGTACTGTAGGAA
GCTTGGAAAGTCAGAGCTCTGCCCCTGGGACTTCTCAAGGATCAATGGAT
ATGGGAGATGTTCTGGAACAGCCATCATCTCATTGCATGACGAGGATAAA
GTCATTACAGCAGTGTGCATCTGCTATTACTGAATTAGTGCATGAAAATA
TTGAGGCAGGTAGACAACTTGAAGCATTCTCAATCCAGCTTGTGATTCTT
GCGATTTGGAAGCAAGCATTGCATATTTGCCATGCACAGGCTGCATCAGC
AATGGAAGGAAGTCCAAGCCAAGAAACGAGCAGATTGAGGAGTGGCAGCA
AGAAGCATGGAACATCTGATACAGAAGAATGTCAGGATATTTTCAGCCCT
GAAGGGCCAGAGGATATATCCGTAGAGATAGAGAGGGAATTTCTCCAGGA
AGTTGAACATGCTGAGGAACTTGCCAAGGTTATTGAGCCTGGAAGAACAG
AGATGCCTGATGCAATGGAGACAATATTTCAAGCTGCCCTTGCTTTGGGA
AGGCATGGAGGGGTTGATGAGCTTATGGGTAAAATGGAAAGGGCAGCTTT
GTTGTATTCAAAGGCAGTGCGATTATTAGTATTTCTTCTAGTCGAAGCAC
CGTCCCTCATTCTCAATCCTCCATTTTCTCTCACAAACTCAGATCGGTAT
AGACTTCAAACTTACATTGATGTTCTTAGAAACAGGCAAGGTTATTCAAG
ATCCCAGAGGATGGCTCTTCTCAAGTGCAAGGAACAGCCATAG
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protein sequence of Tc05v2_p002700.4

>Tc05v2_p002700.4 ID=Tc05v2_p002700.4|Name=Tc05v2_p002700.4|organism=Theobroma cacao|type=polypeptide|length=731bp
MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKEIAMGRL
NKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSM
YITRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSN
AVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVG
AILFQLVTGKTPFTGNNQIQLLQNIVKSTELHFPVENNYLTADCKDLCRK
LLRRNPVERLTFEEFFNHPFLSQGQPDESLRSQRFSRTVAGYPLSESNPV
RNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKRSSMKFAYGFSPDAKDAS
EVTSNPLNKVGFTSKYSGTRHKPENTSFRLESRKVPGETLHEPQKSMDQR
YVNTGSRGTSNLIGDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYK
SESPPLIPFTNNSTSTAPVPIVDATNINICTVGSLESQSSAPGTSQGSMD
MGDVLEQPSSHCMTRIKSLQQCASAITELVHENIEAGRQLEAFSIQLVIL
AIWKQALHICHAQAASAMEGSPSQETSRLRSGSKKHGTSDTEECQDIFSP
EGPEDISVEIEREFLQEVEHAEELAKVIEPGRTEMPDAMETIFQAALALG
RHGGVDELMGKMERAALLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRY
RLQTYIDVLRNRQGYSRSQRMALLKCKEQP*
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