Tc05v2_t002700.3

Overview
NameTc05v2_t002700.3
Unique NameTc05v2_t002700.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2178
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productserine/threonine-protein kinase ATG1c, transcript variant X2
NoteSerine/threonine-protein kinase ATG1c
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597680
GenbankXM_007026835.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g002700Tc05v2_g002700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p002700.3Tc05v2_p002700.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto258361auto258361Theobroma cacaoexon
exon-auto258362auto258362Theobroma cacaoexon
exon-auto258363auto258363Theobroma cacaoexon
exon-auto258364auto258364Theobroma cacaoexon
exon-auto258365auto258365Theobroma cacaoexon
exon-auto258366auto258366Theobroma cacaoexon
exon-auto258367auto258367Theobroma cacaoexon
exon-auto258368auto258368Theobroma cacaoexon
exon-auto258369auto258369Theobroma cacaoexon
exon-auto258370auto258370Theobroma cacaoexon
exon-auto258371auto258371Theobroma cacaoexon
exon-auto258372auto258372Theobroma cacaoexon
exon-auto258373auto258373Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto258374auto258374Theobroma cacaoCDS
CDS-auto258375auto258375Theobroma cacaoCDS
CDS-auto258376auto258376Theobroma cacaoCDS
CDS-auto258377auto258377Theobroma cacaoCDS
CDS-auto258378auto258378Theobroma cacaoCDS
CDS-auto258379auto258379Theobroma cacaoCDS
CDS-auto258380auto258380Theobroma cacaoCDS
CDS-auto258381auto258381Theobroma cacaoCDS
CDS-auto258382auto258382Theobroma cacaoCDS
CDS-auto258383auto258383Theobroma cacaoCDS
CDS-auto258384auto258384Theobroma cacaoCDS
CDS-auto258385auto258385Theobroma cacaoCDS
CDS-auto258386auto258386Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t002700.3 ID=Tc05v2_t002700.3|Name=Tc05v2_t002700.3|organism=Theobroma cacao|type=mRNA|length=2178bp
ATGGCGCAAGCGACGGGGAGGGAAAGAGTGGTAGGGAACTATATAGTAGG
CCGGCAAATCGGTTCGGGTTCGTTCTCGGTTGTTTGGCATGCGAGGCACC
GAGTTCATGGAACCGAAGTGGCGATAAAGGAGATCGCAATGGGTCGACTC
AATAAGAAGTTGCAGGATAGTTTGATGTCGGAGATCTTTATTTTGAGGAG
AATTAATCATCCTAATATTATTCGCATGCATGATATTATAGAGGTTCCTG
GAAAGATACATCTTGTATTGGAGTACTGCAAGGGGGGCGATCTTTCTATG
TATATTACACGCCATGGAAGTGTCTCTGAGGCAACTGCAAAGCATTTCAT
GCAGCAGCTAGCGGCTGGCCTACAAGTTCTCCGTGACAATAATCTTATAC
ATCGGGATCTAAAGCCTCAGAATCTTCTATTATCAAGAAATGATAGCAAT
GCAGTTTTAAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAG
GGGGCTTGCTGAAACATTGTGTGGTTCACCGCTATACATGGCTCCAGAGA
TAATGCAGCTGCAGAAGTATGATGCAAAGGCAGATCTCTGGAGTGTCGGT
GCTATTTTATTTCAGCTCGTTACTGGGAAAACTCCATTCACTGGAAACAA
TCAAATACAGTTACTCCAGAACATTGTGAAATCAACCGAATTGCATTTTC
CTGTGGAGAACAATTATTTGACTGCTGATTGCAAAGATTTATGTCGAAAA
TTGCTTCGACGTAATCCAGTGGAACGTTTAACATTTGAAGAGTTCTTTAA
CCACCCATTTCTTTCTCAGGGCCAACCAGATGAGTCATTGAGGAGTCAGA
GATTTTCAAGAACAGTGGCTGGTTATCCTCTGTCTGAAAGCAATCCTGTA
AGGAATACTGAGGACAGCTTTCAGGAGGACTGTCTCCCTTTCTTTCTGGA
TGATGATTCTAGTGGTCCTGAAGGGAGCCCTTCCTCTGCAATGAAGAGGT
CCTCAATGAAATTTGCTTATGGATTTTCTCCTGATGCAAAAGATGCTAGT
GAAGTAACATCTAATCCTTTGAATAAAGTGGGTTTTACTTCCAAATACAG
TGGTACAAGACATAAACCAGAAAATACTAGTTTTAGGCTTGAAAGTCGCA
AGGTTCCAGGTGAAACTCTGCATGAACCTCAGAAATCCATGGATCAAAGA
TATGTGAATACTGGTTCAAGAGTTGGTGACTCACTGGAGTTGATCGACCA
AGATTATGTTCTTGTGTCTGGACCTCCCATGGATGTGTCATGTTCTTCAG
CTAGCACTTCCAAGCCAAACAATATCCCATACAAATCAGAGAGTCCACCT
TTAATCCCCTTTACAAATAACAGCACATCAACTGCCCCTGTGCCTATTGT
TGATGCCACCAACATTAACATCTGTACTGTAGGAAGCTTGGAAAGTCAGA
GCTCTGCCCCTGGGACTTCTCAAGGATCAATGGATATGGGAGATGTTCTG
GAACAGCCATCATCTCATTGCATGACGAGGATAAAGTCATTACAGCAGTG
TGCATCTGCTATTACTGAATTAGTGCATGAAAATATTGAGGCAGGTAGAC
AACTTGAAGCATTCTCAATCCAGCTTGTGATTCTTGCGATTTGGAAGCAA
GCATTGCATATTTGCCATGCACAGGCTGCATCAGCAATGGAAGGAAGTCC
AAGCCAAGAAACGAGCAGATTGAGGAGTGGCAGCAAGAAGCATGGAACAT
CTGATACAGAAGAATGTCAGGATATTTTCAGCCCTGAAGGGCCAGAGGAT
ATATCCGTAGAGATAGAGAGGGAATTTCTCCAGGAAGTTGAACATGCTGA
GGAACTTGCCAAGGTTATTGAGCCTGGAAGAACAGAGATGCCTGATGCAA
TGGAGACAATATTTCAAGCTGCCCTTGCTTTGGGAAGGCATGGAGGGGTT
GATGAGCTTATGGGTAAAATGGAAAGGGCAGCTTTGTTGTATTCAAAGGC
AGTGCGATTATTAGTATTTCTTCTAGTCGAAGCACCGTCCCTCATTCTCA
ATCCTCCATTTTCTCTCACAAACTCAGATCGGTATAGACTTCAAACTTAC
ATTGATGTTCTTAGAAACAGGCAAGGTTATTCAAGATCCCAGAGGATGGC
TCTTCTCAAGTGCAAGGAACAGCCATAG
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protein sequence of Tc05v2_p002700.3

>Tc05v2_p002700.3 ID=Tc05v2_p002700.3|Name=Tc05v2_p002700.3|organism=Theobroma cacao|type=polypeptide|length=726bp
MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKEIAMGRL
NKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSM
YITRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSN
AVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVG
AILFQLVTGKTPFTGNNQIQLLQNIVKSTELHFPVENNYLTADCKDLCRK
LLRRNPVERLTFEEFFNHPFLSQGQPDESLRSQRFSRTVAGYPLSESNPV
RNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKRSSMKFAYGFSPDAKDAS
EVTSNPLNKVGFTSKYSGTRHKPENTSFRLESRKVPGETLHEPQKSMDQR
YVNTGSRVGDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYKSESPP
LIPFTNNSTSTAPVPIVDATNINICTVGSLESQSSAPGTSQGSMDMGDVL
EQPSSHCMTRIKSLQQCASAITELVHENIEAGRQLEAFSIQLVILAIWKQ
ALHICHAQAASAMEGSPSQETSRLRSGSKKHGTSDTEECQDIFSPEGPED
ISVEIEREFLQEVEHAEELAKVIEPGRTEMPDAMETIFQAALALGRHGGV
DELMGKMERAALLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRYRLQTY
IDVLRNRQGYSRSQRMALLKCKEQP*
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