Tc05v2_t001670.1

Overview
NameTc05v2_t001670.1
Unique NameTc05v2_t001670.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1266
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productlactosylceramide 4-alpha-galactosyltransferase
NoteLactosylceramide 4-alpha-galactosyltransferase, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597570
GenbankXM_018122305.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g001670Tc05v2_g001670Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p001670.1Tc05v2_p001670.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto256634auto256634Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto256635auto256635Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t001670.1 ID=Tc05v2_t001670.1|Name=Tc05v2_t001670.1|organism=Theobroma cacao|type=mRNA|length=1266bp
ATGACAGTGAAAAAAGTAGCATCTCATGAGGTTTTTGGTTGCCGGCTAGT
TAGCCGGGCCAAATCGCCGGTTGTCACTGTAATTCTATTTGCTCTTCTGA
TATTTTTCATGTTTGCAGACAGTCTCGTTTCCAACATATCGCTGCACTCG
GCTGCCTTCGATGAAAAAAAAGACTCTGAGGTTTTACAGGCTCGAAAATT
TATAAGAAAAATCAAGTCGAACGTTTCTGCTGTACAATTGGATGTTTCTA
CACAGAAAAAGATCATTAATGTTGATAGTGAACATCATGATTCTCTAGTT
TCTTCCTCGGTTGTTAGAGAAGAACAGGGAACAGGGAGGTTCCGGAGAAA
ACTGCCAGAAAATGAGATTTTCAGGTCAGACGAATTGACAAAGAAGTTCC
ACGGTCGAGTTCTGGAATTCTTCAACCAAAAGTGTGAAGTTCAATTCTTC
ATGACATGGATTTCAACGGTAGGGTCCTTTGGAAGAAGAGAAATGTTATC
TGTGGAAAGTGTCTTCAAAGCCCATCCTCATGGTTGCTTGATGATTCTAT
CAAGAACCATGGACTCCGTAAATGGGTACAGGATCCTGAAACCGCTGCTT
GATCGTGGCTTCAAAGTGCTTGCAGTTACGCCAGACATGCCATTTCTGCT
CAAGAATACACCAGCTGAAGCTTGGTTTGATGCTATCAAGAGTGGGAAAA
AGGACCCTGGTGAGATTCCACTGGCTCAGAATCTTTCTAATTTAATGAGA
CTTGCAGTTTTGTATAAGTATGGAGGGGTTTACCTGGACACGGATTTCAT
CGTCCTGAAAAGTTTCAAAGGTCTGAAGAATACAATCGGAGCACAAAGTA
TCCATGCCGAGTCCAAGAACTGGACAAGATTGAACAATGCAGTTCTGGTC
TTTGACATGAACCATCCACTCCTATTCAAGTTCATAGAGGAATTCGCTTT
AACCTTTGACGGAAACAAATGGGGACACAATGGGCCCTACATGGTTTCCA
GGGTAGCTCGCAGAGTAGAAGGAAGACCTGGTTATAACTTTACCATCTTG
CCACCCATGGCCTTTTACCCTGTTGATTGGATTAAAATAGGGAGCCTTTT
TAAGATGCCCAAAGCCCGGGCTGACTCAAGATGGGTTGAAGCTAAGCTGC
TACAGCTAACCAGGGAAACTTATGGAGTACACCTTTGGAACAAGCAAAGT
AGCAAATTAATGCTTGAACAAGGAAGTGTGATGGGAAGATTAATATCAGA
GAACTGTCTTGTGTAA
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protein sequence of Tc05v2_p001670.1

>Tc05v2_p001670.1 ID=Tc05v2_p001670.1|Name=Tc05v2_p001670.1|organism=Theobroma cacao|type=polypeptide|length=422bp
MTVKKVASHEVFGCRLVSRAKSPVVTVILFALLIFFMFADSLVSNISLHS
AAFDEKKDSEVLQARKFIRKIKSNVSAVQLDVSTQKKIINVDSEHHDSLV
SSSVVREEQGTGRFRRKLPENEIFRSDELTKKFHGRVLEFFNQKCEVQFF
MTWISTVGSFGRREMLSVESVFKAHPHGCLMILSRTMDSVNGYRILKPLL
DRGFKVLAVTPDMPFLLKNTPAEAWFDAIKSGKKDPGEIPLAQNLSNLMR
LAVLYKYGGVYLDTDFIVLKSFKGLKNTIGAQSIHAESKNWTRLNNAVLV
FDMNHPLLFKFIEEFALTFDGNKWGHNGPYMVSRVARRVEGRPGYNFTIL
PPMAFYPVDWIKIGSLFKMPKARADSRWVEAKLLQLTRETYGVHLWNKQS
SKLMLEQGSVMGRLISENCLV*
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