Tc05v2_t001470.1

Overview
NameTc05v2_t001470.1
Unique NameTc05v2_t001470.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length939
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productdehydrodolichyl diphosphate synthase 2
NoteDehydrodolichyl diphosphate synthase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597552
GenbankXM_007026657.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g001470Tc05v2_g001470Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p001470.1Tc05v2_p001470.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto256167auto256167Theobroma cacaoexon
exon-auto256168auto256168Theobroma cacaoexon
exon-auto256169auto256169Theobroma cacaoexon
exon-auto256170auto256170Theobroma cacaoexon
exon-auto256171auto256171Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto256172auto256172Theobroma cacaoCDS
CDS-auto256173auto256173Theobroma cacaoCDS
CDS-auto256174auto256174Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t001470.1 ID=Tc05v2_t001470.1|Name=Tc05v2_t001470.1|organism=Theobroma cacao|type=mRNA|length=939bp
ATGCACTTCTCTCTGCAATTCTCTCTCCCTCCGGTCATCACCGCACTCTC
CCCTCGGTCAAAATCCTTCTCGCACCAGCCACACCACCACAGGATCAAGA
AGCTGACCTCGCACGTGCCGAAATCCCCACTCTGCTCCACCACGGAATGC
GCACTGATCCACCAGTGCAAAGAAGAAGAAGAAGAAGCCTTTGATGGAAG
AGTCGAAGACCAAACGCTGCCGTTGGGACTACGGCCAGAGGCATTGCCGA
GACACGTGGCGGTGATCATGGATGGAAACCGGAGGTGGGCCCGGTTGAGA
GACTTGCCCGTGGGGTCCGGTTATGAGGCCGGCGTACGGTCCTTGAGAAA
GATTGTGGAGCTCTGTTGCGAATGGGGAATAAAAGTTCTCAGTGTTTTTG
CTTTCTCTAGTGATAATTGGTTTCGTCCCAAAGTGGAAGTGGAATTTTTG
ATGAGTTTGTTTGAGAGGGGAATGCAGGAGGATACGGGAATTTTCTTGAG
GGAAAACATCCGAATATCTGTTATTGGAGATTTAGCTAGGCTCCCTGAGG
CCCTTCAAGAATTGATAATCAACTTGGAGGAAGCCACTAAGAACAACGCA
CGTTTTCAACTAATTGTAGCTGTCAGTTATAGTGGACACTATGATGTTGT
TCAAGCTTGCCAAAGGCTTGCACTGAAGGCAAAGTGTGGTCTTATTGAGC
CCAGTGACATCAACGAGTCTTTAATTGAACAGGAACTAGAAACAAAGTGC
ACTGAGTTCCCCTATCCTGACCTACTCATACGGACCAGCGGTGAGTTTAG
AGTTAGCAATTTCATGTTATGGCAGTTGGCGTATGCTGAACTATTCTTTG
CACAATCACTGTGGCCTGATTTTGGAGAAGCTGAGTTTTTAAAGGCATTG
CTAGCCTTTCAGAAAAGGCAGAGACGTTATGGTGGATGA
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protein sequence of Tc05v2_p001470.1

>Tc05v2_p001470.1 ID=Tc05v2_p001470.1|Name=Tc05v2_p001470.1|organism=Theobroma cacao|type=polypeptide|length=313bp
MHFSLQFSLPPVITALSPRSKSFSHQPHHHRIKKLTSHVPKSPLCSTTEC
ALIHQCKEEEEEAFDGRVEDQTLPLGLRPEALPRHVAVIMDGNRRWARLR
DLPVGSGYEAGVRSLRKIVELCCEWGIKVLSVFAFSSDNWFRPKVEVEFL
MSLFERGMQEDTGIFLRENIRISVIGDLARLPEALQELIINLEEATKNNA
RFQLIVAVSYSGHYDVVQACQRLALKAKCGLIEPSDINESLIEQELETKC
TEFPYPDLLIRTSGEFRVSNFMLWQLAYAELFFAQSLWPDFGEAEFLKAL
LAFQKRQRRYGG*
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