Tc05v2_t001200.1

Overview
NameTc05v2_t001200.1
Unique NameTc05v2_t001200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1812
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
Productlysine--tRNA ligase
NoteLysine--tRNA ligase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597525
GenbankXM_018120870.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g001200Tc05v2_g001200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p001200.1Tc05v2_p001200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto255446auto255446Theobroma cacaoexon
exon-auto255447auto255447Theobroma cacaoexon
exon-auto255448auto255448Theobroma cacaoexon
exon-auto255449auto255449Theobroma cacaoexon
exon-auto255450auto255450Theobroma cacaoexon
exon-auto255451auto255451Theobroma cacaoexon
exon-auto255452auto255452Theobroma cacaoexon
exon-auto255453auto255453Theobroma cacaoexon
exon-auto255454auto255454Theobroma cacaoexon
exon-auto255455auto255455Theobroma cacaoexon
exon-auto255456auto255456Theobroma cacaoexon
exon-auto255457auto255457Theobroma cacaoexon
exon-auto255458auto255458Theobroma cacaoexon
exon-auto255459auto255459Theobroma cacaoexon
exon-auto255460auto255460Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto255461auto255461Theobroma cacaoCDS
CDS-auto255462auto255462Theobroma cacaoCDS
CDS-auto255463auto255463Theobroma cacaoCDS
CDS-auto255464auto255464Theobroma cacaoCDS
CDS-auto255465auto255465Theobroma cacaoCDS
CDS-auto255466auto255466Theobroma cacaoCDS
CDS-auto255467auto255467Theobroma cacaoCDS
CDS-auto255468auto255468Theobroma cacaoCDS
CDS-auto255469auto255469Theobroma cacaoCDS
CDS-auto255470auto255470Theobroma cacaoCDS
CDS-auto255471auto255471Theobroma cacaoCDS
CDS-auto255472auto255472Theobroma cacaoCDS
CDS-auto255473auto255473Theobroma cacaoCDS
CDS-auto255474auto255474Theobroma cacaoCDS
CDS-auto255475auto255475Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t001200.1 ID=Tc05v2_t001200.1|Name=Tc05v2_t001200.1|organism=Theobroma cacao|type=mRNA|length=1812bp
ATGGATTCATTTGTTTCAGAACCTGAACCAGCTTCATCTGAAACTCTCAG
CAAGAAGTATTGCTCTTCATGTGCTTTACTTTCAGTTGCTCTTAAGAGAG
AAAGGAGGGCAAGAGAGAGGCAGGTCAGAGAAGAGGAGAAAAAGAGGCAG
GTTAGCACAATCAGGACATCACAGAATCAAAGACAACAGGCTGCAGACGA
TGATACCATTGATCCTACGCAATATCTGAGGAACAGAATAAAAAGCTTGG
CATTGCTGAAGGAATCCGGTTTCAATCCATACCCTCATAAGTTTGTGGTT
TCAATGTCTATCACTGAATTTGTTGCCAAATTTGGAAGCTTGAGCATCGG
TGAACACGTTGAGAGCACTGAAATCTCCTTAGCAGGGAGAATAATGAACA
AGAGATCATCCTCTTCAAAACTATACTTCTATGACCTTCAAGGAAATGGT
GCTAAAATTCAAGTGATGACAGATGCAAGGCATTCCAACATGGATGAAAA
TGAGTTCTCTAACTACCACTCAGGGGTGAAGCGAGGTGACATTGTAGGGA
TCAGTGGTTTCCCTGGGAAGAGTCAAAGAGGGGAATTAAGTATTTTTCCC
AAGTCATTCACGGTACTCACCCCATGCCTTCACATGCTACCAAGGCATAC
AGTCACCTCCAATTGTGATGAAGCACAGTCTAAGAAAACAACTGATCATT
TATGGACCCCTGGAATGACAAGAAATCCAGAAACTTACACTCTCCGAGAT
CAGGAAACTCGAAACCGTCAACGTTATCTAGACCTGATGTTGAACCCAGA
GGTTCAGAAAGTATTCAGGACCAGGGCCAAAATCATATCTTACTACAGAA
ACTTCCTTGACAATCTTGGATTCATAGAGGTAGAAACTCCTGTGATGACT
ATGACTGCTGGAGGAGCTGCAGCCAGGCCATTCATTACACATCACAACGA
ATTGGATATGAAGCTCTATATGCGTATTTCTCTAGAACTGTACCTCAAGA
AACTGGTTATCGGTGGGCTTGATCGTGTTTATGAGATTGGGAAAGTATTT
AGGAATGAGGGAATGGATCTAACTCATCTTCCAGAATTCACAATGTGTGA
ATTTTACATGGCCTATGCAGATTATAATGACTTGATGGACCTAACAGAGA
AGTTGTTATCAGGTATGGTGAAGGAGCTGACAGGGAGCTATAAAATAAAG
TACCATGGTAATGGCTTCGACAGCGAACCTATAGAAATCGATTTTACTCC
ACCTTTTAGAAGGATGGATCTGATAGAGGAGTTGGAATCTAGAGCAAACC
TCAGCATACCCAAGGACCTTTCCAGTGAACCTGCCAATTGGTATTTGTTG
GAAGCTTGTGAAAGATTTGATGTCAAATGCCCTCCTCCGCACACCACAAC
CCGGTTGTTAGACAAGCTTGTAGGCCATTTTCTTGAAGAAACTTGCATAA
ATCCTACTTTCATTATCAACCATCCTGAGACCATGAGTCCACTGGCAAAG
TGGCACAGATCAAAACCAGGATTAACCGAGCGCTTTGAATTATTTGTCAA
CAAGCGAGAGCTATGCAATGCATATACCGAACTGAATGATCCTGAAGTGC
AGCGCCAGAGATTTGCTGAGCAGCTGAAGGATAGACAATCGGGTGATGAT
GAAGCAATGGTTTTGGATGAATCATTCTGCACTGCTTTGGAGTATGGACT
GCCCCCAACTGCTGGACTGGGAATGGGGATTGATCGGCTAGCAATGTTGC
TTACAGATTCACCAAATGCTAAGGAAGTTCTCCTGTTTCCCGCCATGAAG
CCTCAGGATTAG
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protein sequence of Tc05v2_p001200.1

>Tc05v2_p001200.1 ID=Tc05v2_p001200.1|Name=Tc05v2_p001200.1|organism=Theobroma cacao|type=polypeptide|length=604bp
MDSFVSEPEPASSETLSKKYCSSCALLSVALKRERRARERQVREEEKKRQ
VSTIRTSQNQRQQAADDDTIDPTQYLRNRIKSLALLKESGFNPYPHKFVV
SMSITEFVAKFGSLSIGEHVESTEISLAGRIMNKRSSSSKLYFYDLQGNG
AKIQVMTDARHSNMDENEFSNYHSGVKRGDIVGISGFPGKSQRGELSIFP
KSFTVLTPCLHMLPRHTVTSNCDEAQSKKTTDHLWTPGMTRNPETYTLRD
QETRNRQRYLDLMLNPEVQKVFRTRAKIISYYRNFLDNLGFIEVETPVMT
MTAGGAAARPFITHHNELDMKLYMRISLELYLKKLVIGGLDRVYEIGKVF
RNEGMDLTHLPEFTMCEFYMAYADYNDLMDLTEKLLSGMVKELTGSYKIK
YHGNGFDSEPIEIDFTPPFRRMDLIEELESRANLSIPKDLSSEPANWYLL
EACERFDVKCPPPHTTTRLLDKLVGHFLEETCINPTFIINHPETMSPLAK
WHRSKPGLTERFELFVNKRELCNAYTELNDPEVQRQRFAEQLKDRQSGDD
EAMVLDESFCTALEYGLPPTAGLGMGIDRLAMLLTDSPNAKEVLLFPAMK
PQD*
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