Tc05v2_t001190.2

Overview
NameTc05v2_t001190.2
Unique NameTc05v2_t001190.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1317
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productacyl-coenzyme A oxidase 4, peroxisomal, transcript variant X1
NoteAcyl-coenzyme A oxidase 4, peroxisomal
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597524
GenbankXM_018121886.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g001190Tc05v2_g001190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p001190.2Tc05v2_p001190.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto255417auto255417Theobroma cacaoexon
exon-auto255418auto255418Theobroma cacaoexon
exon-auto255419auto255419Theobroma cacaoexon
exon-auto255420auto255420Theobroma cacaoexon
exon-auto255421auto255421Theobroma cacaoexon
exon-auto255422auto255422Theobroma cacaoexon
exon-auto255423auto255423Theobroma cacaoexon
exon-auto255424auto255424Theobroma cacaoexon
exon-auto255425auto255425Theobroma cacaoexon
exon-auto255426auto255426Theobroma cacaoexon
exon-auto255427auto255427Theobroma cacaoexon
exon-auto255428auto255428Theobroma cacaoexon
exon-auto255429auto255429Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto255430auto255430Theobroma cacaoCDS
CDS-auto255431auto255431Theobroma cacaoCDS
CDS-auto255432auto255432Theobroma cacaoCDS
CDS-auto255433auto255433Theobroma cacaoCDS
CDS-auto255434auto255434Theobroma cacaoCDS
CDS-auto255435auto255435Theobroma cacaoCDS
CDS-auto255436auto255436Theobroma cacaoCDS
CDS-auto255437auto255437Theobroma cacaoCDS
CDS-auto255438auto255438Theobroma cacaoCDS
CDS-auto255439auto255439Theobroma cacaoCDS
CDS-auto255440auto255440Theobroma cacaoCDS
CDS-auto255441auto255441Theobroma cacaoCDS
CDS-auto255442auto255442Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t001190.2 ID=Tc05v2_t001190.2|Name=Tc05v2_t001190.2|organism=Theobroma cacao|type=mRNA|length=1317bp
ATGGCCCTTCTCTCTAAGTTTCGAGATGAAACTGACAAAAGTGCCAAGAG
TTCTTATTTCAACTTACCACCCTTGGATGTTTCGGTTGCATTCCCTCAAG
CAACTCCCGCATCTACTTTTCCTCCTCCTGCTTCCGACTATTATCAATTT
GATGATCTATTGAGTCCTGAGGAGCAGGCGATCCGTAAGAAAGTAAGAGA
GTGTATGGAAAAAGAAGTAGCTCCTGTGATGACAGAGTATTGGGAGAAAG
CGGAGTTTCCATTCCAAATTGTTCCAAAACTTGCTGCTCTTCGTATTGCT
GGTGGTACTATCAAGGGTTATGGATGCCCTGGTCTTTCCATCACTGGAAG
TGCTATATCTACTGCAGAGGTCGCTAGAGTTGATGCAAGCTGCTCAACTT
TTATCTTGGTTCATTCATCTCTAGCCATGCTTACTATTGCATTATGCGGA
TCAGAGGAACAGAAGCAGAAGTATTTACCTTCTTTGGCACAACTCAAAAC
TATAGCTTGTTGGGCTTTGACTGAGCCTGACTATGGAAGTGATGCTAGTG
CTCTGAAGACAACGGCAACAAAGGTAAAGGGAGGTTGGATGCTTGAGGGA
CAAAAGCGATGGATAGGGAACAGTACTTTTGCAGATGTGTTGGTTATTTT
TGCCAGGAATACCACAACCAATCAGATAAACGGATATCTAGTTAAGAAGG
ATTCCCCTGGATTGACAGCTACAAAAATTGCAAACAAGATTGGGTTGAGA
ATTGTTCAAAATGGAGATATTCTTTTAAAGAAAGTCTTTGTTCCTGATGA
GGACAGGTTACCCGGTGTAAACTCTTTTCAGGATACAAGCAAGGTACTGG
CTGTTTCGCGAGTAATGGTTGCATGGCAGCCTATTGGCATATCGATGGGT
GTCTATGACATGTGTCAGAGGTATCTGAAGGAGAGGAAACAGTTCGGAGC
ACCATTGGCAGCCTTCCAAATTAACCAGCAGAAACTTGCTCTCATGCTAG
GTAATGTTCAAGCAATGACCCTAGTTGGTTGGCGCCTTTGCAAATTGTAT
GAGGGGGGTAAAATGACTCCCGGTCAAGCCAGCTTGGGAAAGTCATGGAT
TACCTTGAAGGCAAGAGAAACAGTCTCTCTCGGGCGGGAGTTACTCGGCG
GCAACGGAATCTTGGCTGATTTTCTTGTTGCAAAGGCATTCTGTGATTTG
GAGCCCATTTATACATATGAAGGCACTTATGACATCAACAGCTTGGTCAC
TGGTAGGGAAATTACTGGTTTTGCCAGTTTTAAGCCAGCCGCACTGAGCC
AGCGCAGCCGCCTTTGA
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protein sequence of Tc05v2_p001190.2

>Tc05v2_p001190.2 ID=Tc05v2_p001190.2|Name=Tc05v2_p001190.2|organism=Theobroma cacao|type=polypeptide|length=439bp
MALLSKFRDETDKSAKSSYFNLPPLDVSVAFPQATPASTFPPPASDYYQF
DDLLSPEEQAIRKKVRECMEKEVAPVMTEYWEKAEFPFQIVPKLAALRIA
GGTIKGYGCPGLSITGSAISTAEVARVDASCSTFILVHSSLAMLTIALCG
SEEQKQKYLPSLAQLKTIACWALTEPDYGSDASALKTTATKVKGGWMLEG
QKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDSPGLTATKIANKIGLR
IVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMG
VYDMCQRYLKERKQFGAPLAAFQINQQKLALMLGNVQAMTLVGWRLCKLY
EGGKMTPGQASLGKSWITLKARETVSLGRELLGGNGILADFLVAKAFCDL
EPIYTYEGTYDINSLVTGREITGFASFKPAALSQRSRL*
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