Tc05v2_t000620.5

Overview
NameTc05v2_t000620.5
Unique NameTc05v2_t000620.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3324
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productprotein BREAST CANCER SUSCEPTIBILITY 2 homolog B, transcript variant X4
NoteProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597460
GenbankXM_018121854.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000620Tc05v2_g000620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000620.5Tc05v2_p000620.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto254462auto254462Theobroma cacaoexon
exon-auto254463auto254463Theobroma cacaoexon
exon-auto254464auto254464Theobroma cacaoexon
exon-auto254465auto254465Theobroma cacaoexon
exon-auto254466auto254466Theobroma cacaoexon
exon-auto254467auto254467Theobroma cacaoexon
exon-auto254468auto254468Theobroma cacaoexon
exon-auto254469auto254469Theobroma cacaoexon
exon-auto254470auto254470Theobroma cacaoexon
exon-auto254471auto254471Theobroma cacaoexon
exon-auto254472auto254472Theobroma cacaoexon
exon-auto254473auto254473Theobroma cacaoexon
exon-auto254474auto254474Theobroma cacaoexon
exon-auto254475auto254475Theobroma cacaoexon
exon-auto254476auto254476Theobroma cacaoexon
exon-auto254477auto254477Theobroma cacaoexon
exon-auto254478auto254478Theobroma cacaoexon
exon-auto254479auto254479Theobroma cacaoexon
exon-auto254480auto254480Theobroma cacaoexon
exon-auto254481auto254481Theobroma cacaoexon
exon-auto254482auto254482Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto254483auto254483Theobroma cacaoCDS
CDS-auto254484auto254484Theobroma cacaoCDS
CDS-auto254485auto254485Theobroma cacaoCDS
CDS-auto254486auto254486Theobroma cacaoCDS
CDS-auto254487auto254487Theobroma cacaoCDS
CDS-auto254488auto254488Theobroma cacaoCDS
CDS-auto254489auto254489Theobroma cacaoCDS
CDS-auto254490auto254490Theobroma cacaoCDS
CDS-auto254491auto254491Theobroma cacaoCDS
CDS-auto254492auto254492Theobroma cacaoCDS
CDS-auto254493auto254493Theobroma cacaoCDS
CDS-auto254494auto254494Theobroma cacaoCDS
CDS-auto254495auto254495Theobroma cacaoCDS
CDS-auto254496auto254496Theobroma cacaoCDS
CDS-auto254497auto254497Theobroma cacaoCDS
CDS-auto254498auto254498Theobroma cacaoCDS
CDS-auto254499auto254499Theobroma cacaoCDS
CDS-auto254500auto254500Theobroma cacaoCDS
CDS-auto254501auto254501Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000620.5 ID=Tc05v2_t000620.5|Name=Tc05v2_t000620.5|organism=Theobroma cacao|type=mRNA|length=3324bp
ATGTCGACGTGGCAGATATTCTCTGACGCCGGAAACGATTTCCGGTGGGA
GGTTTCCGGTCGTATCCTCCCGTCTAAACCAGACGATGAGCCGAACCGCG
CTCCTGTTCCTCCACTCCCTTCCATGGCCGATCTCCTGCTTCAAGGATGC
TCGAAGCTTATTGAGAACGGAGATGCAGGAGTCGGGAAATGTCCGATGTT
TAGAACCGGATTAGGTAAATCGGTGGCTTTGAAAGAGTCTTCCATTGCAA
AAGCATTGTCTATTCTTGGCGACGATGACGTTGGCACTGCTGTTACTTCA
AGCGAAGTGGTTCCCGGAAACAATGGATTCGGCTGCACTAACTCTCTTTT
TCAAACGGGCTCTGGGAAAATGGTTAACATATCTTCAGCTGGTTTGGTCA
GAGCTAAGACATTGCTGGGACTGGAACAAGATAATGAGCATCACAGTTTT
GAAGGTTTTCAACATCCAAAGAAGTTACGTGCAACTAATGAACCTTGTGG
GTGGCAAAGTTTTTCTCATTCAGAGAAAAAAGAAGGTTTACGAAATACTG
GGGTTGCGGATTTTTTTTCAGAATCAAGGCACTTGTTAAACTCTAGGAAT
GGTTTTGTAGGAAGTACAGTAGGCAGTGAAAATGACTCAACGCCAGTGCA
TTCCAAAGAGTTTGATTCAGCTCCCAAGCCACCTCCAATCAAGTTTCATA
CTGCTGGTGGAAGGTCGTTATCAGTTTCAAGTGATGCATTGAAGCGTGCA
AGGAGTCTTCTTGGTGATCCAGAGCTAGGGAATTTCTTTGGTGAAGTAGA
AGAAGAGGTTCCACCGTTTACTGTTTCAGAGGAAAAGTTTAATGATGCTT
CATCAAACAAGGAAAACCATTTTTTCACTTCCTTTTCCCTTCAAGGAACA
ATAAAGAGTAAAGATACATCCAAGGATTTTATATCTCCACTGAAAGCATC
TTTCAAGCAAATGAGGTCCATATTTAATTCAGAAAAAATATGTTGTGGGA
GTAACTTGATTGACAAATTTGATGCAGTTGGAAATTCTAATGCATGTATG
TCGACCACCAATATGCCTTCTGCTCAGAAGCCTTTAAGCAATAGTACTTC
TGAGAAAAATTTGGTAACGAACATTTCGTTGCCAAGGCTTGGAAAGTCAT
TTGGCGGCCCATTGGCTGATATTTCAAATAACATTGTCACATCTCAAACA
AATAACAAACGGATTATGACTGAAAAGAAGCGAATTGGAAGATCAAGTTT
TATTTCTCCATACAAGAGACCCCGCTGTTCTGAATTCTCTACTCCATTGA
ATAAAGGTGTTTCCTTTGTAGGTAATGATGATCATTCATGTTGCAAAAGA
ACAGTTTCCACTAAATATCCATTTCAAGTGCCAAGAGTATATATGAAGGA
ATATTTTGCAGTGCCTCCATCAGCCTGCAGCATGTTGGAGTGTTTGTCAG
ACCAAGAGAAACAGATCAAACCAGACAATGCAGTTAAGTATATGTTTAAA
GATGAATCTGGCTTAAGTCGCATTGGGGCAGAAGCTTTTTATGACATGTT
GGCTCATTCTGGAGCTTCTATGCAATACATTTCTAAAGAGTGGGTTGCAA
ATCACTATAAGTGGATTGTCTGGAAACTTGTGTGTTATGAGAGGTGCTAT
CCTTCAAAATGTGCTGGAAATTTTTTGACTATCTCCAATGTCCTCGAGGA
ACTAAAGTACAGATACGATAGGGAAGTAAATCATGCACACCGTTCTGCAA
TAAAAAGAATACTTGAAGGGGATGCTTCGCCTTCTACAATGTTGGTACTA
TGCATTTCAAATATTCAGTCAAATTCTGAACCAAAGATGGAGACAAATCT
ATTGATTACAAATGGAGCTGATAATAGCGGTAATGCAAAAGTGGAACTAA
CAGATGGGTGGTATTCAATGGATGCTGTTTTGGATGTATTGCTATCAAAA
CAGCTTGCTGCTGGAAAGTTATTTGTGGGACAGAAACTTCGGATCTGGGG
AGCAGGATTGTGTGGCTGGGTTGGGCCTGTTTCACCCCTTGAGGCATCAA
GTGCAATAAGTTTACTTTTGAACATAAATGGGACATTTAGAGCTCATTGG
GCTGATCGGCTGGGATTTTGCAAGGGTGTTGGTACTCCTTTGGCATTTAG
GTGCATCAAAAGTGATGGAGGTCCAGTGCCTTGGACTTTAGTAGGAGTCA
CTCGGATATACCCTGTTCTCTACAGGGAGAGGTTGAGTAATGGGGGGTCA
ATTGTCAGATCCGAAAGGATGGAGAGTAGAATGGTTCAACAGCACAACCA
AAGGGGCTCGGTTGTTGTAGATCACGTTATATCTGAGTATCAAAGAGGGG
TCAACAGTTCTCATATCCTTAGTGACAGTGAGAGTGAAGGAGCAAAAATC
TTGAAAATTCTTGAGACAGCTGCTGAGCCAGAAGTCTTAATGGCAGAAAT
GAGCCCAGAGCAACTAACTTCCTTTGCTACATATAAATCAAAACTTGAGG
CAACCAGGCAGTTAGAGATGGAGAAATCAATCAAGAAAGCTCTGGCAGAA
GCTGGCTTAAATGAGCGAGATGTTGTCCCATTCATAAGGGTGAGAGTTGT
TGGATTAACCACTAGGAAATATCATGGAAAGGGAAGACCTAAAGAAGGCA
TAATAACCATTTGGAATCCTACAGAAAAGCAGAAAAGCGAGCTGGTTGAG
GGGCAGGCATACGTCGTTGCTGGGCTTATACCAATATACTCAGATTCAGA
AGCCCTTTATTTACAAGCCCGTGGATCTACCACTAAATGGCAGCCTTTAT
CTCCCATGGCAATGGAATGCTTTGAGCCATTTTTCAGTCCGCGAAAGCCA
ACGAAATTGTCAAATTTAGGTGAAATTCCTCTTTCCAGTGAGTTTGACAT
TGCTGTATATGTTGTGTACGTGGGGGAAGTCTATACGGCTGCTCATCAAA
AGAAACAGTGGGTGTTTGTGACAGATGATTCCATTTCAAATTTACTGTCA
GAAGGATTATCAGATTCTTTACTTGCCATCAGCTTTTGCTCACCATGCAT
TGATAAGGACTCATTTGCTCCAATCAACTCTAACCTAGTGGGATCCATGG
TAGGGTTCTGTAACCTTATCAAGAAAGCAAAGGATCAAATGAATCATCTC
TGGGTTGCCGAAGCAGCAGAAAATTGTGCATACTTTTTAAATTTGAATCC
CTCAATTTGTTCTCACCTTAAAATTGCTGGTGCCTCAGTTCAGACATGGG
CAAAGGCCTCTAACTCGATTATTGACAAACTCAGGGAGAAGGTTTTATTT
ATTCTTGACAATTGTGGAGGCTAA
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protein sequence of Tc05v2_p000620.5

>Tc05v2_p000620.5 ID=Tc05v2_p000620.5|Name=Tc05v2_p000620.5|organism=Theobroma cacao|type=polypeptide|length=1108bp
MSTWQIFSDAGNDFRWEVSGRILPSKPDDEPNRAPVPPLPSMADLLLQGC
SKLIENGDAGVGKCPMFRTGLGKSVALKESSIAKALSILGDDDVGTAVTS
SEVVPGNNGFGCTNSLFQTGSGKMVNISSAGLVRAKTLLGLEQDNEHHSF
EGFQHPKKLRATNEPCGWQSFSHSEKKEGLRNTGVADFFSESRHLLNSRN
GFVGSTVGSENDSTPVHSKEFDSAPKPPPIKFHTAGGRSLSVSSDALKRA
RSLLGDPELGNFFGEVEEEVPPFTVSEEKFNDASSNKENHFFTSFSLQGT
IKSKDTSKDFISPLKASFKQMRSIFNSEKICCGSNLIDKFDAVGNSNACM
STTNMPSAQKPLSNSTSEKNLVTNISLPRLGKSFGGPLADISNNIVTSQT
NNKRIMTEKKRIGRSSFISPYKRPRCSEFSTPLNKGVSFVGNDDHSCCKR
TVSTKYPFQVPRVYMKEYFAVPPSACSMLECLSDQEKQIKPDNAVKYMFK
DESGLSRIGAEAFYDMLAHSGASMQYISKEWVANHYKWIVWKLVCYERCY
PSKCAGNFLTISNVLEELKYRYDREVNHAHRSAIKRILEGDASPSTMLVL
CISNIQSNSEPKMETNLLITNGADNSGNAKVELTDGWYSMDAVLDVLLSK
QLAAGKLFVGQKLRIWGAGLCGWVGPVSPLEASSAISLLLNINGTFRAHW
ADRLGFCKGVGTPLAFRCIKSDGGPVPWTLVGVTRIYPVLYRERLSNGGS
IVRSERMESRMVQQHNQRGSVVVDHVISEYQRGVNSSHILSDSESEGAKI
LKILETAAEPEVLMAEMSPEQLTSFATYKSKLEATRQLEMEKSIKKALAE
AGLNERDVVPFIRVRVVGLTTRKYHGKGRPKEGIITIWNPTEKQKSELVE
GQAYVVAGLIPIYSDSEALYLQARGSTTKWQPLSPMAMECFEPFFSPRKP
TKLSNLGEIPLSSEFDIAVYVVYVGEVYTAAHQKKQWVFVTDDSISNLLS
EGLSDSLLAISFCSPCIDKDSFAPINSNLVGSMVGFCNLIKKAKDQMNHL
WVAEAAENCAYFLNLNPSICSHLKIAGASVQTWAKASNSIIDKLREKVLF
ILDNCGG*
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