Tc05v2_t000620.2

Overview
NameTc05v2_t000620.2
Unique NameTc05v2_t000620.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3324
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productprotein BREAST CANCER SUSCEPTIBILITY 2 homolog B, transcript variant X1
NoteProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597460
GenbankXM_018121851.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000620Tc05v2_g000620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000620.2Tc05v2_p000620.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto254332auto254332Theobroma cacaoexon
exon-auto254333auto254333Theobroma cacaoexon
exon-auto254334auto254334Theobroma cacaoexon
exon-auto254335auto254335Theobroma cacaoexon
exon-auto254336auto254336Theobroma cacaoexon
exon-auto254337auto254337Theobroma cacaoexon
exon-auto254338auto254338Theobroma cacaoexon
exon-auto254339auto254339Theobroma cacaoexon
exon-auto254340auto254340Theobroma cacaoexon
exon-auto254341auto254341Theobroma cacaoexon
exon-auto254342auto254342Theobroma cacaoexon
exon-auto254343auto254343Theobroma cacaoexon
exon-auto254344auto254344Theobroma cacaoexon
exon-auto254345auto254345Theobroma cacaoexon
exon-auto254346auto254346Theobroma cacaoexon
exon-auto254347auto254347Theobroma cacaoexon
exon-auto254348auto254348Theobroma cacaoexon
exon-auto254349auto254349Theobroma cacaoexon
exon-auto254350auto254350Theobroma cacaoexon
exon-auto254351auto254351Theobroma cacaoexon
exon-auto254352auto254352Theobroma cacaoexon
exon-auto254353auto254353Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto254354auto254354Theobroma cacaoCDS
CDS-auto254355auto254355Theobroma cacaoCDS
CDS-auto254356auto254356Theobroma cacaoCDS
CDS-auto254357auto254357Theobroma cacaoCDS
CDS-auto254358auto254358Theobroma cacaoCDS
CDS-auto254359auto254359Theobroma cacaoCDS
CDS-auto254360auto254360Theobroma cacaoCDS
CDS-auto254361auto254361Theobroma cacaoCDS
CDS-auto254362auto254362Theobroma cacaoCDS
CDS-auto254363auto254363Theobroma cacaoCDS
CDS-auto254364auto254364Theobroma cacaoCDS
CDS-auto254365auto254365Theobroma cacaoCDS
CDS-auto254366auto254366Theobroma cacaoCDS
CDS-auto254367auto254367Theobroma cacaoCDS
CDS-auto254368auto254368Theobroma cacaoCDS
CDS-auto254369auto254369Theobroma cacaoCDS
CDS-auto254370auto254370Theobroma cacaoCDS
CDS-auto254371auto254371Theobroma cacaoCDS
CDS-auto254372auto254372Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000620.2 ID=Tc05v2_t000620.2|Name=Tc05v2_t000620.2|organism=Theobroma cacao|type=mRNA|length=3324bp
ATGTCGACGTGGCAGATATTCTCTGACGCCGGAAACGATTTCCGGTGGGA
GGTTTCCGGTCGTATCCTCCCGTCTAAACCAGACGATGAGCCGAACCGCG
CTCCTGTTCCTCCACTCCCTTCCATGGCCGATCTCCTGCTTCAAGGATGC
TCGAAGCTTATTGAGAACGGAGATGCAGGAGTCGGGAAATGTCCGATGTT
TAGAACCGGATTAGGTAAATCGGTGGCTTTGAAAGAGTCTTCCATTGCAA
AAGCATTGTCTATTCTTGGCGACGATGACGTTGGCACTGCTGTTACTTCA
AGCGAAGTGGTTCCCGGAAACAATGGATTCGGCTGCACTAACTCTCTTTT
TCAAACGGGCTCTGGGAAAATGGTTAACATATCTTCAGCTGGTTTGGTCA
GAGCTAAGACATTGCTGGGACTGGAACAAGATAATGAGCATCACAGTTTT
GAAGGTTTTCAACATCCAAAGAAGTTACGTGCAACTAATGAACCTTGTGG
GTGGCAAAGTTTTTCTCATTCAGAGAAAAAAGAAGGTTTACGAAATACTG
GGGTTGCGGATTTTTTTTCAGAATCAAGGCACTTGTTAAACTCTAGGAAT
GGTTTTGTAGGAAGTACAGTAGGCAGTGAAAATGACTCAACGCCAGTGCA
TTCCAAAGAGTTTGATTCAGCTCCCAAGCCACCTCCAATCAAGTTTCATA
CTGCTGGTGGAAGGTCGTTATCAGTTTCAAGTGATGCATTGAAGCGTGCA
AGGAGTCTTCTTGGTGATCCAGAGCTAGGGAATTTCTTTGGTGAAGTAGA
AGAAGAGGTTCCACCGTTTACTGTTTCAGAGGAAAAGTTTAATGATGCTT
CATCAAACAAGGAAAACCATTTTTTCACTTCCTTTTCCCTTCAAGGAACA
ATAAAGAGTAAAGATACATCCAAGGATTTTATATCTCCACTGAAAGCATC
TTTCAAGCAAATGAGGTCCATATTTAATTCAGAAAAAATATGTTGTGGGA
GTAACTTGATTGACAAATTTGATGCAGTTGGAAATTCTAATGCATGTATG
TCGACCACCAATATGCCTTCTGCTCAGAAGCCTTTAAGCAATAGTACTTC
TGAGAAAAATTTGGTAACGAACATTTCGTTGCCAAGGCTTGGAAAGTCAT
TTGGCGGCCCATTGGCTGATATTTCAAATAACATTGTCACATCTCAAACA
AATAACAAACGGATTATGACTGAAAAGAAGCGAATTGGAAGATCAAGTTT
TATTTCTCCATACAAGAGACCCCGCTGTTCTGAATTCTCTACTCCATTGA
ATAAAGGTGTTTCCTTTGTAGGTAATGATGATCATTCATGTTGCAAAAGA
ACAGTTTCCACTAAATATCCATTTCAAGTGCCAAGAGTATATATGAAGGA
ATATTTTGCAGTGCCTCCATCAGCCTGCAGCATGTTGGAGTGTTTGTCAG
ACCAAGAGAAACAGATCAAACCAGACAATGCAGTTAAGTATATGTTTAAA
GATGAATCTGGCTTAAGTCGCATTGGGGCAGAAGCTTTTTATGACATGTT
GGCTCATTCTGGAGCTTCTATGCAATACATTTCTAAAGAGTGGGTTGCAA
ATCACTATAAGTGGATTGTCTGGAAACTTGTGTGTTATGAGAGGTGCTAT
CCTTCAAAATGTGCTGGAAATTTTTTGACTATCTCCAATGTCCTCGAGGA
ACTAAAGTACAGATACGATAGGGAAGTAAATCATGCACACCGTTCTGCAA
TAAAAAGAATACTTGAAGGGGATGCTTCGCCTTCTACAATGTTGGTACTA
TGCATTTCAAATATTCAGTCAAATTCTGAACCAAAGATGGAGACAAATCT
ATTGATTACAAATGGAGCTGATAATAGCGGTAATGCAAAAGTGGAACTAA
CAGATGGGTGGTATTCAATGGATGCTGTTTTGGATGTATTGCTATCAAAA
CAGCTTGCTGCTGGAAAGTTATTTGTGGGACAGAAACTTCGGATCTGGGG
AGCAGGATTGTGTGGCTGGGTTGGGCCTGTTTCACCCCTTGAGGCATCAA
GTGCAATAAGTTTACTTTTGAACATAAATGGGACATTTAGAGCTCATTGG
GCTGATCGGCTGGGATTTTGCAAGGGTGTTGGTACTCCTTTGGCATTTAG
GTGCATCAAAAGTGATGGAGGTCCAGTGCCTTGGACTTTAGTAGGAGTCA
CTCGGATATACCCTGTTCTCTACAGGGAGAGGTTGAGTAATGGGGGGTCA
ATTGTCAGATCCGAAAGGATGGAGAGTAGAATGGTTCAACAGCACAACCA
AAGGGGCTCGGTTGTTGTAGATCACGTTATATCTGAGTATCAAAGAGGGG
TCAACAGTTCTCATATCCTTAGTGACAGTGAGAGTGAAGGAGCAAAAATC
TTGAAAATTCTTGAGACAGCTGCTGAGCCAGAAGTCTTAATGGCAGAAAT
GAGCCCAGAGCAACTAACTTCCTTTGCTACATATAAATCAAAACTTGAGG
CAACCAGGCAGTTAGAGATGGAGAAATCAATCAAGAAAGCTCTGGCAGAA
GCTGGCTTAAATGAGCGAGATGTTGTCCCATTCATAAGGGTGAGAGTTGT
TGGATTAACCACTAGGAAATATCATGGAAAGGGAAGACCTAAAGAAGGCA
TAATAACCATTTGGAATCCTACAGAAAAGCAGAAAAGCGAGCTGGTTGAG
GGGCAGGCATACGTCGTTGCTGGGCTTATACCAATATACTCAGATTCAGA
AGCCCTTTATTTACAAGCCCGTGGATCTACCACTAAATGGCAGCCTTTAT
CTCCCATGGCAATGGAATGCTTTGAGCCATTTTTCAGTCCGCGAAAGCCA
ACGAAATTGTCAAATTTAGGTGAAATTCCTCTTTCCAGTGAGTTTGACAT
TGCTGTATATGTTGTGTACGTGGGGGAAGTCTATACGGCTGCTCATCAAA
AGAAACAGTGGGTGTTTGTGACAGATGATTCCATTTCAAATTTACTGTCA
GAAGGATTATCAGATTCTTTACTTGCCATCAGCTTTTGCTCACCATGCAT
TGATAAGGACTCATTTGCTCCAATCAACTCTAACCTAGTGGGATCCATGG
TAGGGTTCTGTAACCTTATCAAGAAAGCAAAGGATCAAATGAATCATCTC
TGGGTTGCCGAAGCAGCAGAAAATTGTGCATACTTTTTAAATTTGAATCC
CTCAATTTGTTCTCACCTTAAAATTGCTGGTGCCTCAGTTCAGACATGGG
CAAAGGCCTCTAACTCGATTATTGACAAACTCAGGGAGAAGGTTTTATTT
ATTCTTGACAATTGTGGAGGCTAA
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protein sequence of Tc05v2_p000620.2

>Tc05v2_p000620.2 ID=Tc05v2_p000620.2|Name=Tc05v2_p000620.2|organism=Theobroma cacao|type=polypeptide|length=1108bp
MSTWQIFSDAGNDFRWEVSGRILPSKPDDEPNRAPVPPLPSMADLLLQGC
SKLIENGDAGVGKCPMFRTGLGKSVALKESSIAKALSILGDDDVGTAVTS
SEVVPGNNGFGCTNSLFQTGSGKMVNISSAGLVRAKTLLGLEQDNEHHSF
EGFQHPKKLRATNEPCGWQSFSHSEKKEGLRNTGVADFFSESRHLLNSRN
GFVGSTVGSENDSTPVHSKEFDSAPKPPPIKFHTAGGRSLSVSSDALKRA
RSLLGDPELGNFFGEVEEEVPPFTVSEEKFNDASSNKENHFFTSFSLQGT
IKSKDTSKDFISPLKASFKQMRSIFNSEKICCGSNLIDKFDAVGNSNACM
STTNMPSAQKPLSNSTSEKNLVTNISLPRLGKSFGGPLADISNNIVTSQT
NNKRIMTEKKRIGRSSFISPYKRPRCSEFSTPLNKGVSFVGNDDHSCCKR
TVSTKYPFQVPRVYMKEYFAVPPSACSMLECLSDQEKQIKPDNAVKYMFK
DESGLSRIGAEAFYDMLAHSGASMQYISKEWVANHYKWIVWKLVCYERCY
PSKCAGNFLTISNVLEELKYRYDREVNHAHRSAIKRILEGDASPSTMLVL
CISNIQSNSEPKMETNLLITNGADNSGNAKVELTDGWYSMDAVLDVLLSK
QLAAGKLFVGQKLRIWGAGLCGWVGPVSPLEASSAISLLLNINGTFRAHW
ADRLGFCKGVGTPLAFRCIKSDGGPVPWTLVGVTRIYPVLYRERLSNGGS
IVRSERMESRMVQQHNQRGSVVVDHVISEYQRGVNSSHILSDSESEGAKI
LKILETAAEPEVLMAEMSPEQLTSFATYKSKLEATRQLEMEKSIKKALAE
AGLNERDVVPFIRVRVVGLTTRKYHGKGRPKEGIITIWNPTEKQKSELVE
GQAYVVAGLIPIYSDSEALYLQARGSTTKWQPLSPMAMECFEPFFSPRKP
TKLSNLGEIPLSSEFDIAVYVVYVGEVYTAAHQKKQWVFVTDDSISNLLS
EGLSDSLLAISFCSPCIDKDSFAPINSNLVGSMVGFCNLIKKAKDQMNHL
WVAEAAENCAYFLNLNPSICSHLKIAGASVQTWAKASNSIIDKLREKVLF
ILDNCGG*
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