Tc05v2_t000180.1

Overview
NameTc05v2_t000180.1
Unique NameTc05v2_t000180.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1185
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productpolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597409
GenbankXM_007026442.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000180Tc05v2_g000180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000180.1Tc05v2_p000180.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto253304auto253304Theobroma cacaoexon
exon-auto253305auto253305Theobroma cacaoexon
exon-auto253306auto253306Theobroma cacaoexon
exon-auto253307auto253307Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto253308auto253308Theobroma cacaoCDS
CDS-auto253309auto253309Theobroma cacaoCDS
CDS-auto253310auto253310Theobroma cacaoCDS
CDS-auto253311auto253311Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000180.1 ID=Tc05v2_t000180.1|Name=Tc05v2_t000180.1|organism=Theobroma cacao|type=mRNA|length=1185bp
ATGGCAAACACGATGACTCATCCTCCCCTTCTTTTCCTCGCACTTCTCTT
TCTCTTCTTTAACTCATCAGTAGCAGCCGCCATGAAACTTAATGTGATCA
GTTATGGAGCCAAAGCCGATGGCACAACTGACTCGACCAAAGCCTTTCTT
GCTGCATGGACTCAAGCTTGTGCCTCGACTGTACCTGCAAGCATCTACGT
ACCAAAAGGGAGGTTTTTGCTACGCAATGTGGACTTTCGTGGCCAATGCA
ACAACGCTGCTATTTCAATACGAATCGATGGAACCCTCGTGGCTCCGATG
GATTATCGGGTTATTGGAAATGTCGATAGCTGGCTTTCCTTTGAGAATGT
TGATGGAGTTTCCATTTATGGTGGAAAACTTGATGGGAAGGGTACTGGCT
TGTGGGCTTGCAAGAATTCAGGCAAGAGTTGCCCCTCCGGTGCTACGTCA
CTGAGCATTAGCAATTCAAAGAACATCGTCATCATGGGATTAACATCACT
AAACAGCCAGATGTTCCACATAGTCATCAATGGCTGCCACAATGTCAAAA
TGCAAGGAGTGAAGGTCTCTGCTCCTGGTAACAGCCCCAACACCGACGGA
ATTCATGTACAACTATCCAGCAGCGTCACGATCCTCAACTCCAGGATTCA
AACAGGCGATGATTGCATCTCAATTGGCCCTGGTGCCACTAATCTCTGGA
TGGAAAACATCGCATGTGGCCCCGGTCATGGCATCAGCATCGGAAGTTTG
GGGAAGGACCAAATTGAGGCTGGAGTGCAGAATGTGACAGTTAAAACAGC
CACATTCATCGGCACCCAGAATGGGGTGAGGATAAAATCTTGGGCCAGAC
CGAGCAATGGTTTTGCCAGCAATATTGTTTTCCAGCATGTTGTTATGAAA
AATGTCCAGAATCCCATTGTCATCGATCAAAATTACTGCCCTGGCAACAA
AAATTGTCCTGATCAGGTTTCTGGTGTTAAAGTTAGTGATGTAACATACC
AGGACATACATGGAACATCGGCAACAGAAGTTGCAGTGAAATTCGATTGC
AGTTCAAAACATCCTTGCACTGGAATAAGATTGCAAGAGGTGAAACTTAC
ATACAAGAATGAGGCAGCTCAAGCTTCATGCAGCCACGCTGGTGGAACTG
TTTCTGGTCTTGTTCAGCCCACGAGTTGTTTGTAG
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protein sequence of Tc05v2_p000180.1

>Tc05v2_p000180.1 ID=Tc05v2_p000180.1|Name=Tc05v2_p000180.1|organism=Theobroma cacao|type=polypeptide|length=395bp
MANTMTHPPLLFLALLFLFFNSSVAAAMKLNVISYGAKADGTTDSTKAFL
AAWTQACASTVPASIYVPKGRFLLRNVDFRGQCNNAAISIRIDGTLVAPM
DYRVIGNVDSWLSFENVDGVSIYGGKLDGKGTGLWACKNSGKSCPSGATS
LSISNSKNIVIMGLTSLNSQMFHIVINGCHNVKMQGVKVSAPGNSPNTDG
IHVQLSSSVTILNSRIQTGDDCISIGPGATNLWMENIACGPGHGISIGSL
GKDQIEAGVQNVTVKTATFIGTQNGVRIKSWARPSNGFASNIVFQHVVMK
NVQNPIVIDQNYCPGNKNCPDQVSGVKVSDVTYQDIHGTSATEVAVKFDC
SSKHPCTGIRLQEVKLTYKNEAAQASCSHAGGTVSGLVQPTSCL*
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