Tc05v2_t000100.1

Overview
NameTc05v2_t000100.1
Unique NameTc05v2_t000100.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length969
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable uridine nucleosidase 2, transcript variant X1
NoteProbable uridine nucleosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597399
GenbankXM_007026423.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000100Tc05v2_g000100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000100.1Tc05v2_p000100.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto253031auto253031Theobroma cacaoexon
exon-auto253032auto253032Theobroma cacaoexon
exon-auto253033auto253033Theobroma cacaoexon
exon-auto253034auto253034Theobroma cacaoexon
exon-auto253035auto253035Theobroma cacaoexon
exon-auto253036auto253036Theobroma cacaoexon
exon-auto253037auto253037Theobroma cacaoexon
exon-auto253038auto253038Theobroma cacaoexon
exon-auto253039auto253039Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto253040auto253040Theobroma cacaoCDS
CDS-auto253041auto253041Theobroma cacaoCDS
CDS-auto253042auto253042Theobroma cacaoCDS
CDS-auto253043auto253043Theobroma cacaoCDS
CDS-auto253044auto253044Theobroma cacaoCDS
CDS-auto253045auto253045Theobroma cacaoCDS
CDS-auto253046auto253046Theobroma cacaoCDS
CDS-auto253047auto253047Theobroma cacaoCDS
CDS-auto253048auto253048Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000100.1 ID=Tc05v2_t000100.1|Name=Tc05v2_t000100.1|organism=Theobroma cacao|type=mRNA|length=969bp
ATGGCAGCAGCAGAAGCAAAGAAGATCATCATTGACACTGATCCAGGCAT
TGATGATGCCATGGCAATATTTCTGGCACTGAGGTCTCCGGAAGTGGAGG
TCATCGGACTCACCACTATTTATGGCAATGTCTACACCACTTTGGCCACT
AGGAATGCCTTACATTTGTTAGAGGTTGCAGGCAGAACTGATATCCCTGT
GGCGGAAGGATCCCATGTTACTATCACTAAAGGTACAAAACTTCGCATTG
CTGATTTTGTCCATGGTGCGGATGGGCTTGGCAACCAAAATTTCCCTCCA
CCAAAAGGAAAGCCTATTGACATGTCAGCCGCTGCTTTTCTTGTTGAGCA
AGCCAACCTTTATCCTGGGAAGGTTACTGTGGTGGCATTGGGTCCCCTAA
CCAATATTGCACTGGCTATTCAACTAGATCCATCATTTACTAAAAACGTT
GGGCAAATTGTTCTTCTTGGTGGCGCTTTTGCAGTAAATGGCAATGTGAA
TCCAGCAGCTGAGGCCAATATCTTCGGCGACCCAGATGCTGCAGATATTG
TGTTCACAAGTGGAGCAGATGTTTTGGCCGTGGGGATAAATGTTACTCAT
CAAGTTGTTTTGACTGATGCTGATCGCGACAAATTGGCGAGGTCAATAGG
AAAATTTGCTCAGTACTTGTGCAAGATATTAGAGGTGTACTTCAGTTATC
ATCATGATGTATACAGCACAAAAGGTGTATATCTTCATGATCCAACAGCC
ATGGTTGCAGCCATTAATCCTTCACTTCTTACTTATATGGAGGGTGCTGT
GAGAGTTCAAACAAATGGCATCACAAGAGGACTGACAATATTATACAACA
AGCAGAAGAGGTTTGCTGAAATTACAGAGTGGTCTGATCAACCCACGGTG
AAGGTGGCAGTCACAGTCGATGCTCCTGCAGTTGTCAAATTGGTTATGGA
GAGGCTGATGGACTGGTAG
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protein sequence of Tc05v2_p000100.1

>Tc05v2_p000100.1 ID=Tc05v2_p000100.1|Name=Tc05v2_p000100.1|organism=Theobroma cacao|type=polypeptide|length=323bp
MAAAEAKKIIIDTDPGIDDAMAIFLALRSPEVEVIGLTTIYGNVYTTLAT
RNALHLLEVAGRTDIPVAEGSHVTITKGTKLRIADFVHGADGLGNQNFPP
PKGKPIDMSAAAFLVEQANLYPGKVTVVALGPLTNIALAIQLDPSFTKNV
GQIVLLGGAFAVNGNVNPAAEANIFGDPDAADIVFTSGADVLAVGINVTH
QVVLTDADRDKLARSIGKFAQYLCKILEVYFSYHHDVYSTKGVYLHDPTA
MVAAINPSLLTYMEGAVRVQTNGITRGLTILYNKQKRFAEITEWSDQPTV
KVAVTVDAPAVVKLVMERLMDW*
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