Tc04v2_t025880.1

Overview
NameTc04v2_t025880.1
Unique NameTc04v2_t025880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1065
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprotein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
NoteProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603783
GenbankXM_007035950.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g025880Tc04v2_g025880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p025880.1Tc04v2_p025880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto252651auto252651Theobroma cacaoexon
exon-auto252652auto252652Theobroma cacaoexon
exon-auto252653auto252653Theobroma cacaoexon
exon-auto252654auto252654Theobroma cacaoexon
exon-auto252655auto252655Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto252656auto252656Theobroma cacaoCDS
CDS-auto252657auto252657Theobroma cacaoCDS
CDS-auto252658auto252658Theobroma cacaoCDS
CDS-auto252659auto252659Theobroma cacaoCDS
CDS-auto252660auto252660Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t025880.1 ID=Tc04v2_t025880.1|Name=Tc04v2_t025880.1|organism=Theobroma cacao|type=mRNA|length=1065bp
ATGGCCAATGGGCATCCATCCTTCCTTGCCCTCTTGTTCCCCCCTCCAGC
TCTAGGCAGCTACCGTACACTGAAGATGGAATCAGATGAACCCGACGGAC
ACTCACTGAGCAGGAGGGCCGAGTGGTGTGATGTGACCCCTCTCCCCCAA
GATGATGGTCCCAACCCAGTAGTCCCCATAGCCTACAAGGAAGAATTCCG
CGAAACCATGGACTACTTCCGAGCCATCTACCAAGCTGATGAACGCTCCC
CTCGTGCCTTCCGTCTCACTCGCCAAGCCATCGTCGCCAATCCTGGCAAT
TACACCGTGTGGCACTTTAGGCGACTCCTACTCCAAACCCTTAATGTCGA
TTTGTACGAGGAACTGGATTTCCTTCAACAGATTGCCAATTCTAACTCTA
AGAACTATCAATTGTGGCATCACCGTCGGTGGGTTGTTGAGAGATTGGGA
ATTGATGCTAGAGCCAAGGAACTTCAACTCACTAAGAAGATACTATCACT
TGATGCCAAAAATTATCATGCCTGGTCACATAGGCAGTGGGTGCTTCAGG
CACTAGGAGGATGGGAAGATGAACTTGATTATTGTCAGCAGCTCCTTGAA
GAAGATATTTTTAATAATTCTGCTTGGAATCAGAGATATTTTGTTATAAC
TAGATCTCCTTTCTTGGGAGGCCTCAAAGCCATGAGAGAGTCTGAAGTGA
GATACACTGTGGAAGCCATTCTGGCCAAGCCAGAGAATGAGAGCCCATGG
AGATACCTCCGGGGTCTTTACAAGGACAACATTGAGGTTTGGGTTAATGA
TCCACAGATCTCCTTAGTGTGTTTGAAGGTAATGAATGCCAAAAGCAACT
ATGTATTTGCTTTGAGTATGCTTCTGGATCTTCTATGTCATGGTTTTCAA
CCAAGTGAAGAGTTCAGAGATGCTGTAGATGCTCTGTGGACTTCAGACAA
TCACCCACTAGATTCTGACCTGGCAAAAGCAGTTTGTTGCATCTTGGAGC
ACGTGGATTCTTTGAGAGCAAGCTATTGGAGGTGGCGCAAATGCAAGCTT
CCTCTGGCAGCTTGA
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protein sequence of Tc04v2_p025880.1

>Tc04v2_p025880.1 ID=Tc04v2_p025880.1|Name=Tc04v2_p025880.1|organism=Theobroma cacao|type=polypeptide|length=355bp
MANGHPSFLALLFPPPALGSYRTLKMESDEPDGHSLSRRAEWCDVTPLPQ
DDGPNPVVPIAYKEEFRETMDYFRAIYQADERSPRAFRLTRQAIVANPGN
YTVWHFRRLLLQTLNVDLYEELDFLQQIANSNSKNYQLWHHRRWVVERLG
IDARAKELQLTKKILSLDAKNYHAWSHRQWVLQALGGWEDELDYCQQLLE
EDIFNNSAWNQRYFVITRSPFLGGLKAMRESEVRYTVEAILAKPENESPW
RYLRGLYKDNIEVWVNDPQISLVCLKVMNAKSNYVFALSMLLDLLCHGFQ
PSEEFRDAVDALWTSDNHPLDSDLAKAVCCILEHVDSLRASYWRWRKCKL
PLAA*
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