Tc04v2_t025790.1

Overview
NameTc04v2_t025790.1
Unique NameTc04v2_t025790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1368
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 100 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductCBL-interacting serine/threonine-protein kinase 1, transcript variant X1
NoteCBL-interacting serine/threonine-protein kinase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603774
GenbankXM_007035932.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g025790Tc04v2_g025790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p025790.1Tc04v2_p025790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto252356auto252356Theobroma cacaoexon
exon-auto252357auto252357Theobroma cacaoexon
exon-auto252358auto252358Theobroma cacaoexon
exon-auto252359auto252359Theobroma cacaoexon
exon-auto252360auto252360Theobroma cacaoexon
exon-auto252361auto252361Theobroma cacaoexon
exon-auto252362auto252362Theobroma cacaoexon
exon-auto252363auto252363Theobroma cacaoexon
exon-auto252364auto252364Theobroma cacaoexon
exon-auto252365auto252365Theobroma cacaoexon
exon-auto252366auto252366Theobroma cacaoexon
exon-auto252367auto252367Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto252368auto252368Theobroma cacaoCDS
CDS-auto252369auto252369Theobroma cacaoCDS
CDS-auto252370auto252370Theobroma cacaoCDS
CDS-auto252371auto252371Theobroma cacaoCDS
CDS-auto252372auto252372Theobroma cacaoCDS
CDS-auto252373auto252373Theobroma cacaoCDS
CDS-auto252374auto252374Theobroma cacaoCDS
CDS-auto252375auto252375Theobroma cacaoCDS
CDS-auto252376auto252376Theobroma cacaoCDS
CDS-auto252377auto252377Theobroma cacaoCDS
CDS-auto252378auto252378Theobroma cacaoCDS
CDS-auto252379auto252379Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t025790.1 ID=Tc04v2_t025790.1|Name=Tc04v2_t025790.1|organism=Theobroma cacao|type=mRNA|length=1368bp
ATGAGCAGCACTAGGACCAGAGACAAGGAGAACAACAACAAGCAGCAGCA
GCAGCAGCCGCAGCCAGGGATGCTGCAATTGGGGAATTACGAGTTAGGAA
GGACTCTTGGAGAAGGCAATTTCGCAAAAGTTAAATTGGCTAAGAACCTC
CACTCCGGCCACCCTTTTGCTGTTAAGATCCTTGACAAGGCCAAAATCAT
TCAACTCAACATCACCGATCAGATCAAGAGAGAAATCGCCACCTTGAAGC
TGCTCAAACATCCTAACGTAGTTCGGTTACATGAGGTCTTGGCAAGCAAA
ACCAAGATTTACATGGTCCTAGAATACGTAACTGGAGGGGAATTGTTTGA
CAGAATTGCATCCAAAGGGAAACTTTCCGAGTCCCAAGGAAGGAAGCTCT
TCCAGCAATTAATTGATGGTGTTAGTTACTGTCACGGCAAAGGTGTTTAT
CACAGGGATCTTAAGCTCGAAAACGTTCTTATTGATGCAAAAGGGAACAT
AAAGATATCTGATTTTGGACTCAGTGCGTTGCCCCAACACATCAGGGGGG
ATGGCTTACTGCATACAACCTGCGGAAGTCCTAACTATGTGGCACCAGAG
ATTCTCGCTAATAAAGGGTATGATGGTGCCACCTCAGACATATGGTCATG
TGGCGTCATCTTGTATGTAATTCTCACCGGATATCTCCCTTTCGATGATA
GAAATCTTGCAGTTCTCTATCAGAAGATTTTCAAAGGGGATGCTCAGATT
CCTAAGTGGTTATCATCTGGTGCTCGGAACATGATAAGAAGGATTCTTGA
TCCAAACCCTGATACCAGGATAACAATTGCAGGTATTGAAGATGATGAAT
GGTTCAAGCAAGACTATACTCCTGCAGTAGCTGATGATGAGGAAGAAGAT
TTATACATTGACGATGAAACCTTCTCAATGGATGAAGTGGCATCTGATGG
AACTAGAAGACCAGAATCACCCACTATCATTAATGCTTTTCAGTTGATAG
GAATGTCCTCATGCCTGGACCTTTCTGGTTTCTTCGAGGAGGAGGATGTC
TCTGAAAGGAAGATCAGATTTACATCCAATCATTCGGCAAAAGATTTGCT
CGCAAGGATCCAAGATATTGTGACAGAGATGGGATTTCGAGTCCAAATGA
AGAACGGAAGGTTGAAAGCAACACAAGAACACAGAGGCCAGAAATGTCAT
GGCAGCCTTTCAGTTGCAGCCGAGGTGTTTGAGATAAGCCCATCCTTGTA
TGTAGTTGAATTAAGAAAATCGTGTGGTGATTCTACAGTTTATAGACAGT
TATGTAAAAAGCTTTCAAATGACTTGGGCGTTCGTCAAGGCCAAGGGCTG
GTGTACACAGAAGCTTGA
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protein sequence of Tc04v2_p025790.1

>Tc04v2_p025790.1 ID=Tc04v2_p025790.1|Name=Tc04v2_p025790.1|organism=Theobroma cacao|type=polypeptide|length=456bp
MSSTRTRDKENNNKQQQQQPQPGMLQLGNYELGRTLGEGNFAKVKLAKNL
HSGHPFAVKILDKAKIIQLNITDQIKREIATLKLLKHPNVVRLHEVLASK
TKIYMVLEYVTGGELFDRIASKGKLSESQGRKLFQQLIDGVSYCHGKGVY
HRDLKLENVLIDAKGNIKISDFGLSALPQHIRGDGLLHTTCGSPNYVAPE
ILANKGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDAQI
PKWLSSGARNMIRRILDPNPDTRITIAGIEDDEWFKQDYTPAVADDEEED
LYIDDETFSMDEVASDGTRRPESPTIINAFQLIGMSSCLDLSGFFEEEDV
SERKIRFTSNHSAKDLLARIQDIVTEMGFRVQMKNGRLKATQEHRGQKCH
GSLSVAAEVFEISPSLYVVELRKSCGDSTVYRQLCKKLSNDLGVRQGQGL
VYTEA*
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