Tc04v2_t025660.3

Overview
NameTc04v2_t025660.3
Unique NameTc04v2_t025660.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1104
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productpto-interacting protein 1, transcript variant X1
NotePto-interacting protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603761
GenbankXM_018119721.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g025660Tc04v2_g025660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p025660.3Tc04v2_p025660.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto252116auto252116Theobroma cacaoexon
exon-auto252117auto252117Theobroma cacaoexon
exon-auto252118auto252118Theobroma cacaoexon
exon-auto252119auto252119Theobroma cacaoexon
exon-auto252120auto252120Theobroma cacaoexon
exon-auto252121auto252121Theobroma cacaoexon
exon-auto252122auto252122Theobroma cacaoexon
exon-auto252123auto252123Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto252124auto252124Theobroma cacaoCDS
CDS-auto252125auto252125Theobroma cacaoCDS
CDS-auto252126auto252126Theobroma cacaoCDS
CDS-auto252127auto252127Theobroma cacaoCDS
CDS-auto252128auto252128Theobroma cacaoCDS
CDS-auto252129auto252129Theobroma cacaoCDS
CDS-auto252130auto252130Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t025660.3 ID=Tc04v2_t025660.3|Name=Tc04v2_t025660.3|organism=Theobroma cacao|type=mRNA|length=1104bp
ATGAGTTGCTTCAGCTGTTGTGAAGAAGATGATATTCATAAAGCTTCTGA
AAATGGACCATTCAGGCCAAATAACCCTGCAAGTGCTCATGTAGGCAATA
CTGCTGGAGGTTATCTAGTCCAAGAAGCAGTAACAAGGGATACACAGTCT
GTTACCATTCATCCTATTGCCGTCCCTAAAATTTCAGTGGATGAGCTTAA
GGAAATGACAGATAATTTTGGTACAAAATCCTTAATTGGTGAGGGGTCTC
ACGGAAGAGTATACTATGGCATTCTCAAAAGTGGGCAGGCTGCAGCCATC
AAAAAGTTGGATTCCAGTAAGCAGCCAGACCAGGAATTTCTAGCGCAGGT
ATCCATGGTGTCAAGACTAAAACATGATAACGTGGTTGAGCTTGTTGGTT
ACTGTGTTGATGGCTCTCTCCGTGTCCTGGCCTATGAGTACGCTCCTAAT
GGATCTCTCCATGATATGCTTCATGGAAAGAAAGGTGTGAAAGGAGCAGA
GCCAGGTCCAGTTCTATCATGGACACAGAGAGTCAAAATTGCAGTTGAGG
CAGCCAAAGGCCTTGAATATTTGCACGAGAAGGCACGGCCTCATATAATC
CACCGTGACATTAAGTCCAGCAATTTACTTCTTTTTGATGATGATGTTGC
TAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCCGATATGGCAGCTC
GTCTCCATTCTACACGGGTTCTTGGAACCTTTGGTTATCATGCTCCAGAA
TATGCAATGACTGGAACGCTTAGTTCTAAGAGTGATGTTTACAGCTTTGG
TGTTATCCTGCTGGAGCTCTTAACTGGACGTAAACCTGTTGATCATACAT
TGCCACGTGGACAACAGAGTCTTGTGACATGGGCAACCCCAAAACTTAGT
GAAGACAAGGTGAAGCAGTGTGTTGATGCTAGACTGAATGGAGAATACCC
TCCCAAGGCAGTTGCAAAGCTCGCTGCTGTTGCTGCCTTGTGCGTGCAAT
ATGAAGCTGATTTTCGACCTAATATGAGCATTGTAGTGAAAGCTCTTCAG
CCCCTTCTGAACACTCGGCCTGCAGCTTCCCACAGTGAAACGCGACACTC
GTGA
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protein sequence of Tc04v2_p025660.3

>Tc04v2_p025660.3 ID=Tc04v2_p025660.3|Name=Tc04v2_p025660.3|organism=Theobroma cacao|type=polypeptide|length=368bp
MSCFSCCEEDDIHKASENGPFRPNNPASAHVGNTAGGYLVQEAVTRDTQS
VTIHPIAVPKISVDELKEMTDNFGTKSLIGEGSHGRVYYGILKSGQAAAI
KKLDSSKQPDQEFLAQVSMVSRLKHDNVVELVGYCVDGSLRVLAYEYAPN
GSLHDMLHGKKGVKGAEPGPVLSWTQRVKIAVEAAKGLEYLHEKARPHII
HRDIKSSNLLLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPE
YAMTGTLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLS
EDKVKQCVDARLNGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQ
PLLNTRPAASHSETRHS*
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