Tc04v2_t024890.1

Overview
NameTc04v2_t024890.1
Unique NameTc04v2_t024890.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productputative ubiquitin-conjugating enzyme E2 39
NotePutative ubiquitin-conjugating enzyme E2 38
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603668
GenbankXM_007035762.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g024890Tc04v2_g024890Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p024890.1Tc04v2_p024890.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto250015auto250015Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto250016auto250016Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t024890.1 ID=Tc04v2_t024890.1|Name=Tc04v2_t024890.1|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGGCGCTTTCAGTTCACTCCATGTCCCAAAATGGCAGCTGCGAAGTGGA
AGAAATCGACGTCTTCCGCCAGTTTGACGTCGTGTCAGATGACTCCGACC
ATTACTTCCTCAACTCCAAGTCCAAAACCAAATCCGCCCAACCGGATCCC
ATCGCCAACGCATCGAGCGGGGTCCACAAGAAGATCATGCAAGAATGGAG
AATCCTGGAAAAAAGCCTCCCAGAGTCCATCATCGTACGCGTCTACGAGA
AACGCCTCGATCTCTTACGAGCTGCAATCGTCGGGGCAGCAGGTACTCCG
TACCACGACGGACTCTTTTTCTTCGACTTAGCATTTCCGCCTGATTATCC
GACTAAACCTCCCCTTGTCCATTACCGATCTTTCGGGCTCCGGATCAACC
CGAACTTGTATGCAAACGGCCGGGTCTGTTTGAGTTTGATCAACACCTGG
AGTGGTAGAAAGAGTGAGAAATGGAACCCCAAAGAGTCGACCGTGCTTCA
GGTTTTGGTTTCCATCCAAGCTTTGGTTCTTAACGAGAAGCCTTACTTTA
ACGAGCCGGGTCATGGGATTTGGCCTGGGAAGACCATCTGGGAAAAAAAA
TCTGCTGCTTATAACGAGGATGTTTTTGTGATGTCTTGCAAGAAGATGTT
GTTTCTAATGAGGAAGCCTCCCAAGAATTTTGAAGGTTTCGTTGTTGGGC
ATTTCAGAGAGCGTGGGAGCTCGATCCTGTTGGCTTGCAAGAGTTACGCA
AACGGAAGTGTCAAAGTTGGGTACTTCAAAAACGATGGCCCTGCAGGAAC
ATCATCAGCTGATTTTCCTTCTGGGAGTTTTGATGTGTCTGAGAAATTCA
AAGGGTATCTGAAACAGTTATACCCGGAGCTGGCTGCAGCGTTTCTCAAG
GCTGGGGCTTCTTTGGGGAACTCCATCGAACAATTGAATGTCGAGGAGAA
GAAGAAGAAGAAGAAACCGAAGTCGTCCAAGAAGCAGGTCACTGAGACGA
GAGCCAGAAAGACGGGTGGAGTTGCTAGGAGGCTGTTGGGGAAGTTAAAG
AAGGTTTTCGGACAGAAACTTGGCGGAACCGGTAGCATCAATGTGATCAA
AAAGTATAGACTTTGA
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protein sequence of Tc04v2_p024890.1

>Tc04v2_p024890.1 ID=Tc04v2_p024890.1|Name=Tc04v2_p024890.1|organism=Theobroma cacao|type=polypeptide|length=372bp
MALSVHSMSQNGSCEVEEIDVFRQFDVVSDDSDHYFLNSKSKTKSAQPDP
IANASSGVHKKIMQEWRILEKSLPESIIVRVYEKRLDLLRAAIVGAAGTP
YHDGLFFFDLAFPPDYPTKPPLVHYRSFGLRINPNLYANGRVCLSLINTW
SGRKSEKWNPKESTVLQVLVSIQALVLNEKPYFNEPGHGIWPGKTIWEKK
SAAYNEDVFVMSCKKMLFLMRKPPKNFEGFVVGHFRERGSSILLACKSYA
NGSVKVGYFKNDGPAGTSSADFPSGSFDVSEKFKGYLKQLYPELAAAFLK
AGASLGNSIEQLNVEEKKKKKKPKSSKKQVTETRARKTGGVARRLLGKLK
KVFGQKLGGTGSINVIKKYRL*
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