Tc04v2_t024450.1

Overview
NameTc04v2_t024450.1
Unique NameTc04v2_t024450.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1728
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productdihydrolipoyl dehydrogenase 2, chloroplastic
NoteDihydrolipoyl dehydrogenase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603617
GenbankXM_018120020.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g024450Tc04v2_g024450Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p024450.1Tc04v2_p024450.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto249184auto249184Theobroma cacaoexon
exon-auto249185auto249185Theobroma cacaoexon
exon-auto249186auto249186Theobroma cacaoexon
exon-auto249187auto249187Theobroma cacaoexon
exon-auto249188auto249188Theobroma cacaoexon
exon-auto249189auto249189Theobroma cacaoexon
exon-auto249190auto249190Theobroma cacaoexon
exon-auto249191auto249191Theobroma cacaoexon
exon-auto249192auto249192Theobroma cacaoexon
exon-auto249193auto249193Theobroma cacaoexon
exon-auto249194auto249194Theobroma cacaoexon
exon-auto249195auto249195Theobroma cacaoexon
exon-auto249196auto249196Theobroma cacaoexon
exon-auto249197auto249197Theobroma cacaoexon
exon-auto249198auto249198Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto249199auto249199Theobroma cacaoCDS
CDS-auto249200auto249200Theobroma cacaoCDS
CDS-auto249201auto249201Theobroma cacaoCDS
CDS-auto249202auto249202Theobroma cacaoCDS
CDS-auto249203auto249203Theobroma cacaoCDS
CDS-auto249204auto249204Theobroma cacaoCDS
CDS-auto249205auto249205Theobroma cacaoCDS
CDS-auto249206auto249206Theobroma cacaoCDS
CDS-auto249207auto249207Theobroma cacaoCDS
CDS-auto249208auto249208Theobroma cacaoCDS
CDS-auto249209auto249209Theobroma cacaoCDS
CDS-auto249210auto249210Theobroma cacaoCDS
CDS-auto249211auto249211Theobroma cacaoCDS
CDS-auto249212auto249212Theobroma cacaoCDS
CDS-auto249213auto249213Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t024450.1 ID=Tc04v2_t024450.1|Name=Tc04v2_t024450.1|organism=Theobroma cacao|type=mRNA|length=1728bp
ATGCATTCTGCTTTATCGTCTCTGTCATTCTCTCAAGCCACCACAGTTCC
TAGATCAAATTACGCCTTCGATTCTCATTCTCCTGCCTTCGCTCTATCCC
AGCCGGTGAATCTCCGCTTCTGCGGACTCAGGAGGGAAGCCTTCGGGTTC
TCCTCCTTGACTCAGTCGTGTTCTGGCCGAGTTCGCGTCTCGAGCCGTGG
ACATTCCAAGAAAATCTCTGCTTCCGCTGTAGGCAATGGAACTCCTCCCA
AATCGTTCGATTATGATTTGATTATCATCGGCGCTGGCGTCGGCGGCCAT
GGAGCTGCGCTGCATGCTGTCGAGAAGGGTTTGAAAACTGCTATAATCGA
AGGAGATGTGGTGGGAGGAACGTGTGTCAACCGAGGTTGTGTTCCTTCGA
AAGCTCTATTGGCTGTGAGTGGTAGGATGCGTGAACTTCAGAGCGAGCAT
CACATGAAGGCTTTCGGTTTGCAGGTTTCTGCTGCCGGATATGACAGACA
GGGAGTTGCTGACCATGCGAATAATCTTGCTTCAAAAATTCGAAGCAATT
TGACTAACTCAATGAAGGCGCTTGGAGTAGACATATTGACTGGTGTTGGT
ACTATTGTGGGCCCTCAAAAAGTGAAATATGGGAAGGTTGGTTTTCCTGA
CAACATAGTAACTGCGAAAGATATAATCATTGCTACTGGTTCTGTTCCTT
TTGTTCCCAAGGGCATTGAAGTCGATGGGAAGACTGTTATTACTAGTGAC
CATGCCCTCAAATTGGAGTTTGTTCCTGATTGGATTGCGATTGTAGGAAG
TGGTTACATTGGTCTTGAATTCAGTGATGTATACACTGCACTTGGCAGTG
AGGTCACATTTATTGAAGCTTTAGATCAACTTATGCCTGGGTTTGATCCT
GAGATTGGTAAGTTGGCCCAAAGGGTGCTGATCAACCCAAGGCAAATTGA
CTATCATACTGGAGTGTTTGCAACCAAGATCACTCCTGCAAGGGATGGGA
AACCAGTCATTATTGAGCTTACTGATGCCAAGACTAAGGAACCCAAAGAC
ACCTTGGAGGTAGATGCAGCCTTAATTGCAACCGGAAGGGCTCCGTTCAC
TAATGGTCTCGGATTGGAGAATATTAACGTGGTAACACAAAGGGGTTTTG
TTCCTGTTGATGAGAGAATGCGAGTAATTGATGCAAATGGCAAGCTGGTT
ACTCACCTGTACTGCATTGGTGATGCAAATGGTAAAATGATGCTTGCTCA
TGCAGCTAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAG
ATCACATGCTTAATCACCTTAGCATCCCCGCAGCCTGCTTCACTCACCCT
GAAATCAGTATGGTTGGAATGACAGAGCCTCAAGCAAGGGAGAAAGCTGA
GAAGGAAGGATTTGAAGTAAGCGTCGCCAAAACAAGTTTCAAGGCTAACA
CAAAGGCTTTGGCAGAAAATGAAGGGGAGGGACTTGCTAAGTTGATATAC
AGACCTGACAACGGAGAGATTCTCGGAGTTCATATATTTGGCTTGCATGC
AGCAGACCTCATCCATGAGGCATCAAATGCCATAGCTTTAGGGACTCGAA
TCCAGGACATCAAATTTGCGGTTCATGCACATCCAACTCTGTCCGAAGTT
CTCGACGAACTATTTAAATCAGCCAAAGTTAAAGCGCCTTCTTCTAGTAG
TCCAGTAAGTGAACCAGTTGCAGTCTAA
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protein sequence of Tc04v2_p024450.1

>Tc04v2_p024450.1 ID=Tc04v2_p024450.1|Name=Tc04v2_p024450.1|organism=Theobroma cacao|type=polypeptide|length=576bp
MHSALSSLSFSQATTVPRSNYAFDSHSPAFALSQPVNLRFCGLRREAFGF
SSLTQSCSGRVRVSSRGHSKKISASAVGNGTPPKSFDYDLIIIGAGVGGH
GAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEH
HMKAFGLQVSAAGYDRQGVADHANNLASKIRSNLTNSMKALGVDILTGVG
TIVGPQKVKYGKVGFPDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSD
HALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDP
EIGKLAQRVLINPRQIDYHTGVFATKITPARDGKPVIIELTDAKTKEPKD
TLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGKLV
THLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHMLNHLSIPAACFTHP
EISMVGMTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIY
RPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEV
LDELFKSAKVKAPSSSSPVSEPVAV*
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