Tc04v2_t023790.1

Overview
NameTc04v2_t023790.1
Unique NameTc04v2_t023790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2484
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable acyl-CoA dehydrogenase IBR3
NoteProbable acyl-CoA dehydrogenase IBR3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603544
GenbankXM_007035585.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g023790Tc04v2_g023790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p023790.1Tc04v2_p023790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto247805auto247805Theobroma cacaoexon
exon-auto247806auto247806Theobroma cacaoexon
exon-auto247807auto247807Theobroma cacaoexon
exon-auto247808auto247808Theobroma cacaoexon
exon-auto247809auto247809Theobroma cacaoexon
exon-auto247810auto247810Theobroma cacaoexon
exon-auto247811auto247811Theobroma cacaoexon
exon-auto247812auto247812Theobroma cacaoexon
exon-auto247813auto247813Theobroma cacaoexon
exon-auto247814auto247814Theobroma cacaoexon
exon-auto247815auto247815Theobroma cacaoexon
exon-auto247816auto247816Theobroma cacaoexon
exon-auto247817auto247817Theobroma cacaoexon
exon-auto247818auto247818Theobroma cacaoexon
exon-auto247819auto247819Theobroma cacaoexon
exon-auto247820auto247820Theobroma cacaoexon
exon-auto247821auto247821Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto247822auto247822Theobroma cacaoCDS
CDS-auto247823auto247823Theobroma cacaoCDS
CDS-auto247824auto247824Theobroma cacaoCDS
CDS-auto247825auto247825Theobroma cacaoCDS
CDS-auto247826auto247826Theobroma cacaoCDS
CDS-auto247827auto247827Theobroma cacaoCDS
CDS-auto247828auto247828Theobroma cacaoCDS
CDS-auto247829auto247829Theobroma cacaoCDS
CDS-auto247830auto247830Theobroma cacaoCDS
CDS-auto247831auto247831Theobroma cacaoCDS
CDS-auto247832auto247832Theobroma cacaoCDS
CDS-auto247833auto247833Theobroma cacaoCDS
CDS-auto247834auto247834Theobroma cacaoCDS
CDS-auto247835auto247835Theobroma cacaoCDS
CDS-auto247836auto247836Theobroma cacaoCDS
CDS-auto247837auto247837Theobroma cacaoCDS
CDS-auto247838auto247838Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t023790.1 ID=Tc04v2_t023790.1|Name=Tc04v2_t023790.1|organism=Theobroma cacao|type=mRNA|length=2484bp
ATGGCGAATCGAACGGGTGATCTGGTGGAGCCAGTGCAGGAAGCTCACAA
GATTGATGTTAAGGCTTTGTTTGTCTACGCCGCTGCTCATATCCCTGGAT
TCCCTCTCTCTCCCTCTAAATTCACTCTCTCTCAGTTTGGACATGGACAA
TCGAATCCGACGTATTTGATGGAAGTCGAAACGGGAGGGGCTGTGAAACG
CTACGTTTTGAGGAAGAAGCCTCCCGGGAAGCTGCTTCAGTCTGCTCATG
CCGTTGAGAGAGAATATCAGGTTCTCAAGGCACTAGCCGATCATACCAAA
GTGCCAGTTCCGAAGGTTTTCTGTTTATGTAATGATCCAAGCGTGATTGG
AACTGCATTTTACATAATGGAGTACTTGGAAGGTCGCATATTTGTAGACA
ACAAGCTACCAGGTGTGGCACCTGAGAGGAGGAGGGCAATATATCAGGCA
ACTGCAAAAGTGTTAGCTTCATTGCATTCTGCTAATGTTGATGCCATTGG
TTTGGGAAACTATGGGCGCCGAGATAACTATTGTAAAAGACAGATAGAGA
GGTGGTTTAAACAATACCTTGCTTCAACTAGTGAGGGAAAACCAGAGAGA
AATCCCAAGATGTTTGAGCTGGTTGATTGGTTACGAAAGAATATTCCTCC
AGAGGATTCATCAGGTGCCACAGGAGGCCTAGTTCATGGAGATTTCCGCA
TTGATAATGTTGTGTTCCATCCCACTGAGGACCGAGTTATTGGTGTTCTT
GATTGGGAACTGTCTACGCTTGGAAACCAAATGTGTGATGTTGCACACAG
CTGCATGCATTACATTGTACAAATTGGGCCTGAATTAGAACAACTGGGTG
ACGGGCTTGAGCTCATTGGAATTCCAGAAGGGATTCCTTCACTGGCTGAA
TTTCTGGCAGAATACTGCTTTGAAGCTGGAAAAGCATGGCCTGTCTCTGA
GTGGAAGTTCTATGTTGCCTTTTCTTTGTTCCGTGGAGCGTCTATCTACA
CAGGAGTATATAATAGATGGCTTATGGGTAATGCTTCAGGAGGTAAACGT
GCAGAACATACAGGAAGGCATGCTAATGGTCTCATAGCTTCTGCATTGGC
TTTTATTGCGAAGAAGACTGTGCTTCCAGAGCGTCCCCCCTCTGTTTCAC
AAGGTATAAGGCAATATGGGATTGAGAACAAAGTTAGAGGCCTTCCTGAG
GGAAGTGGGAGGTTAGTCCCTAGTAAAAGGGTTCAGGAATTGAGAAACAG
ATTGATTAAGTTCATGGAAGATCATATCTATCCCATGGAAAATGAATTCA
GCAAACGTGCGCAGTCTGACTTGCGTTGGACAGTGCATCCAGAGGAGGAG
AAGTTAAAAGAGCTTGCAAAGAAAGAAGGGTTGTGGAATTTATGGATACC
TTTTGACAGTGCTGCTAGGACAAAAGAACTTATTTTTAATGGGAGTGAGA
ATGCTTACTTTGACAATGCACATGATCGTTTACTTGGTGCGGGCCTATCA
AACCTTGAATATGGATACCTTTGTGAGATTATGGGTCGCTCTGTTTGGGC
TCCGCAGGTGTTTAATTGTGGTGCACCAGATACTGGGAATATGGAGGTAC
TGTTGCGGTATGGGACTAAAGAACAGCTACACGAATGGCTCGTTCCATTG
CTTGAGGGGAGAATTCGCTCTGGATTTGCAATGACAGAACCACAAGTTGC
TTCCTCTGATGCAACTAATATTGAGTGTTCCATCAAAAGACAAGGAGATT
CATATATCATCAATGGGACCAAGTGGTGGACTAGCGGAGCCATGGATCCA
AGATGCAGAATTCTTATACTTATGGGAAAAACTGACTTCACTGCCCCTAA
GCATAAGCAGCAATCCATGATATTAGTGGATGTCCAGACTCCCGGGGTAT
ACATAAAGAGACCACTAACAGTGTTCGGCTTTGATGATGCTCCTCATGGA
CATGCAGAAATCTCCTTTGAGAATGTTCACGTGCCAGCAAAGAATATCTT
ATTGGGAGAAGGACGTGGATTTGAGATCGCACAGGGAAGACTGGGCCCAG
GAAGATTGCACCACTGCATGAGACTGGTTGGTGCTGCTGAGCGTGGCATG
CAGTTGATGGCTCAAAGGGCTTTTCGTCGGAAAACATTTGGAAAATCGAT
TGCTCAACATGGTTCATTTCTTTCAGATATTGCAAAGTGTCGAGTAGAGC
TGGAGCAAACCAGGTTGTTGGTTCTTGAGGCCGCTGACCAGCTCGATCGA
CTTGGAAACAAGAAAGCCCGAGGCACCATTGCAATGGCCAAGGTAGCAGC
TCCAAACATGGCACTGAAGGTGCTAGACATGGCAATGCAAGTACACGGTG
CAGCGGGGTTATCGTCCGACACTGTCCTGGCGCACCTGTGGGCCACAGCA
AGAACATTGAGAATCGCAGATGGACCTGATGAAGTGCATTTGGGTACCAT
CGCCAAGCTAGAACTACAGAGAGCTAAGCTTTGA
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protein sequence of Tc04v2_p023790.1

>Tc04v2_p023790.1 ID=Tc04v2_p023790.1|Name=Tc04v2_p023790.1|organism=Theobroma cacao|type=polypeptide|length=828bp
MANRTGDLVEPVQEAHKIDVKALFVYAAAHIPGFPLSPSKFTLSQFGHGQ
SNPTYLMEVETGGAVKRYVLRKKPPGKLLQSAHAVEREYQVLKALADHTK
VPVPKVFCLCNDPSVIGTAFYIMEYLEGRIFVDNKLPGVAPERRRAIYQA
TAKVLASLHSANVDAIGLGNYGRRDNYCKRQIERWFKQYLASTSEGKPER
NPKMFELVDWLRKNIPPEDSSGATGGLVHGDFRIDNVVFHPTEDRVIGVL
DWELSTLGNQMCDVAHSCMHYIVQIGPELEQLGDGLELIGIPEGIPSLAE
FLAEYCFEAGKAWPVSEWKFYVAFSLFRGASIYTGVYNRWLMGNASGGKR
AEHTGRHANGLIASALAFIAKKTVLPERPPSVSQGIRQYGIENKVRGLPE
GSGRLVPSKRVQELRNRLIKFMEDHIYPMENEFSKRAQSDLRWTVHPEEE
KLKELAKKEGLWNLWIPFDSAARTKELIFNGSENAYFDNAHDRLLGAGLS
NLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGTKEQLHEWLVPL
LEGRIRSGFAMTEPQVASSDATNIECSIKRQGDSYIINGTKWWTSGAMDP
RCRILILMGKTDFTAPKHKQQSMILVDVQTPGVYIKRPLTVFGFDDAPHG
HAEISFENVHVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLVGAAERGM
QLMAQRAFRRKTFGKSIAQHGSFLSDIAKCRVELEQTRLLVLEAADQLDR
LGNKKARGTIAMAKVAAPNMALKVLDMAMQVHGAAGLSSDTVLAHLWATA
RTLRIADGPDEVHLGTIAKLELQRAKL*
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