Tc04v2_t023180.1

Overview
NameTc04v2_t023180.1
Unique NameTc04v2_t023180.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2235
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcullin-1
NoteCullin-1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603479
GenbankXM_018120019.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g023180Tc04v2_g023180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p023180.1Tc04v2_p023180.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto246766auto246766Theobroma cacaoexon
exon-auto246767auto246767Theobroma cacaoexon
exon-auto246768auto246768Theobroma cacaoexon
exon-auto246769auto246769Theobroma cacaoexon
exon-auto246770auto246770Theobroma cacaoexon
exon-auto246771auto246771Theobroma cacaoexon
exon-auto246772auto246772Theobroma cacaoexon
exon-auto246773auto246773Theobroma cacaoexon
exon-auto246774auto246774Theobroma cacaoexon
exon-auto246775auto246775Theobroma cacaoexon
exon-auto246776auto246776Theobroma cacaoexon
exon-auto246777auto246777Theobroma cacaoexon
exon-auto246778auto246778Theobroma cacaoexon
exon-auto246779auto246779Theobroma cacaoexon
exon-auto246780auto246780Theobroma cacaoexon
exon-auto246781auto246781Theobroma cacaoexon
exon-auto246782auto246782Theobroma cacaoexon
exon-auto246783auto246783Theobroma cacaoexon
exon-auto246784auto246784Theobroma cacaoexon
exon-auto246785auto246785Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto246786auto246786Theobroma cacaoCDS
CDS-auto246787auto246787Theobroma cacaoCDS
CDS-auto246788auto246788Theobroma cacaoCDS
CDS-auto246789auto246789Theobroma cacaoCDS
CDS-auto246790auto246790Theobroma cacaoCDS
CDS-auto246791auto246791Theobroma cacaoCDS
CDS-auto246792auto246792Theobroma cacaoCDS
CDS-auto246793auto246793Theobroma cacaoCDS
CDS-auto246794auto246794Theobroma cacaoCDS
CDS-auto246795auto246795Theobroma cacaoCDS
CDS-auto246796auto246796Theobroma cacaoCDS
CDS-auto246797auto246797Theobroma cacaoCDS
CDS-auto246798auto246798Theobroma cacaoCDS
CDS-auto246799auto246799Theobroma cacaoCDS
CDS-auto246800auto246800Theobroma cacaoCDS
CDS-auto246801auto246801Theobroma cacaoCDS
CDS-auto246802auto246802Theobroma cacaoCDS
CDS-auto246803auto246803Theobroma cacaoCDS
CDS-auto246804auto246804Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t023180.1 ID=Tc04v2_t023180.1|Name=Tc04v2_t023180.1|organism=Theobroma cacao|type=mRNA|length=2235bp
ATGACGATGAACGAGAGGAAGACGATCGACCTTGAACAAGGATGGGAATT
TATGCAAAAAGGGATTACAAAGCTGAAGAACATTCTAGAAGGCTTACCGG
AGCCACAGTTTAGCTCTGAGGATTATATGATGCTCTATACAACTATTTAC
AATATGTGCACCCAAAAGCCTCCTCACGATTATTCTCAACAGTTGTATGA
TAAGTATCGAGAATCTTTTGAAGAATACATCACTTCAACGGTACTTCCTT
CTTTACGAGAAAAGCACGATGAGTTTATGTTGAGAGAGCTGGTGAAAAGG
TGGGCTAATCATAAAGTAATGGTTAGGTGGCTTTCTCGTTTCTTCCATTA
TCTTGATCGCTACTTTATTGCTCGGAGGTCACTCCCTCCCCTTAATGAAG
TTGGACTCACATGTTTCCGAGAACTGGTCTACCAAGAGCTAAATGCAAAA
GTGAGGGATGCAGTAATTTCTCTAATTGATCAAGAACGTGAGGGCGAGCA
GATTGATCGAGCTTTATTGAAGAATGTTTTAGATATATTTGTTGAAATTG
GAATGGGACAAATGGATTACTATGAGAATGATTTTGAGGCCACTATGCTC
AAAGATACAGCTGCCTATTATTCAAGGAAGGCTTCAAATTGGATTTTAGA
AGATTCTTGTCCAGATTATATGTTGAAAGCTGAGGAGTGTTTAAAACGAG
AGAAGGATAGGGTCTCACATTATTTGCATTCTAGTAGTGAGCCAAAACTA
CTTGAGAAAGTTCAACATGAGTTGTTGTCTGTAAATGCAAACCTACTCCT
TGAGAAAGAGCACTCTGGATGCCATGCATTGCTCAGAGATGACAAGGTGG
AGGATTTGTCAAGAATGTTTAGACTCTTTTGTAAAATTCCTCGAGGCTTG
GATCCTGTGTCAGGCATTTTCAAACAGCATGTTACTGCTGAAGGCACAGC
TTTGGTCAAACAGGCTGAGGATGCTGCAAGCAACAAAAAGGCAGATAAAA
AGGATGTGGTAGGCATGCAAGAGCAGGTTTTCGTGAGGAAAGTGATTGAG
CTGCATGATAAATACCTAGCATATGTGAATGATTGTTTTCAAAATCATAC
CCTCTTTCACAAGGCTCTCAAGGAGGCTTTTGAAGTCTTTTGCAACAAGG
GTGTTGCTGGAAGCTCAAGTGCAGAGCTACTTGCCACTTTTTGTGATAAT
ATTCTTAAGAAAGGTGGAAGTGAAAAATTAAGTGATGAAGCAATTGAAGA
AACTCTTGAAAAGGTTGTGAAGCTCCTTGCTTATATTAGTGACAAGGACT
TGTTTGCAGAATTTTATAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTGAC
AAGAGTGCTAATGATGACCATGAGAGAAGTATATTGACAAAGCTGAAACA
GCAGTGTGGTGGTCAGTTCACCTCAAAGATGGAGGGAATGGTCACAGATT
TGACATTGGCAAGGGAAAACCAGACAAGTTTTGATGAGTACTTGAGCAAT
AATCCAAATGCAAATCCAGGGATCGACTTGACAGTAACTGTTTTGACTAC
TGGCTTCTGGCCAAGTTACAAGTCTTTTGATCTTAACCTTCCTGCTGAGA
TGATTAAGTGTGTTGAGGTTTTCAGGGACTTCTATCAGACAAAAACCAAA
CATAGAAAACTTACTTGGATATACTCTTTGGGTACTTGTAACCTTGTTGG
GAAGTTTGAACCAAAAACAATGGAGTTGATTGTCACAACATATCAGGCCT
CTGCCTTACTGCTGTTCAATTCCTCAGATAGGCTGAGCTATTCAGAAATC
ATGACACAATTGAACTTAACTGATGATGATGTAGTTAGACTTCTGCATTC
ATTGTCATGTGCTAAGTATAAAATTCTTAATAAGGAGCCAAGTACGAAAA
CAATCTGTCCTACTGATTACTTTGAGTTCAACTCTAAGTTTACTGATAAA
ATGAGGAGGATCAAGATTCCTCTTCCCCCTGTGGATGAGAAGAAGAAAGT
AATTGAAGATGTTGACAAGGATAGACGGTATGCCATTGATGCCTCAATTG
TACGTATCATGAAGAGTCGGAAAGTTCTTGGTCACCAGCAGTTGGTTATG
GAGTGCGTCGAGCAGTTGGGCCGCATGTTCAAGCCTGATTTCAAGGCAAT
CAAAAAGCGAATTGAGGACCTGATTACTCGTGACTATCTTGAGAGGGACA
AGGATAACCCCAATACATTCCGGTACTTGGCATGA
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protein sequence of Tc04v2_p023180.1

>Tc04v2_p023180.1 ID=Tc04v2_p023180.1|Name=Tc04v2_p023180.1|organism=Theobroma cacao|type=polypeptide|length=745bp
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIY
NMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKR
WANHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYQELNAK
VRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFEATML
KDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKL
LEKVQHELLSVNANLLLEKEHSGCHALLRDDKVEDLSRMFRLFCKIPRGL
DPVSGIFKQHVTAEGTALVKQAEDAASNKKADKKDVVGMQEQVFVRKVIE
LHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDN
ILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFD
KSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFDEYLSN
NPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIKCVEVFRDFYQTKTK
HRKLTWIYSLGTCNLVGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEI
MTQLNLTDDDVVRLLHSLSCAKYKILNKEPSTKTICPTDYFEFNSKFTDK
MRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVM
ECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPNTFRYLA*
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