Tc04v2_t022830.1

Overview
NameTc04v2_t022830.1
Unique NameTc04v2_t022830.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length705
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
ProductCASP-like protein 1E1, transcript variant X2
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603443
GenbankXM_007035429.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g022830Tc04v2_g022830Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p022830.1Tc04v2_p022830.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto245972auto245972Theobroma cacaoexon
exon-auto245973auto245973Theobroma cacaoexon
exon-auto245974auto245974Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto245975auto245975Theobroma cacaoCDS
CDS-auto245976auto245976Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t022830.1 ID=Tc04v2_t022830.1|Name=Tc04v2_t022830.1|organism=Theobroma cacao|type=mRNA|length=705bp
ATGCAAAAGCAGAGAAAAAAAGAGAGAGAGAGAAAGATGGAAGACCAACA
GAATTGGAAAGGGGAAGAAGAGGAAGAGAGTGAAATAAATGAGCTGCTAT
GTAGTATTATGGAAGGTTATAATGACAAACTGATACCTCCATTGTCACAA
TTCTCACCGTCGCGACAGGCTGCTGCCGCCATTGTTGAGGAAAAGGGTTC
GAGCTCGAGGGAACGTGGCAGGGCAAAAGAAGCTAAAGAAGTGACTGAGA
GCTTGAAGAAGGAAAGAGATAGGAGGGAGAAGATGGCTGAGAATTATGAT
CTTCTTCAGTCTATGGTCCCTAATCTCTTCCCTAAGGCCACAAGAGAGAT
GATTGTTGGTGAAACGATTGCATATATCCAATCTCTTGAGAAAGAGATAA
CAAGGATGGAAGAGCTGAAGAATTCATCTGAGTCATCGAAAGGGAAGATG
CATCTGTATTCCAACAGGAATTCCTCAATCGATGTCACTGTCTCCAGCAA
CGTCGTCTTCTTTGGGATTCAATCAATGGTACGACCAAGACTTGTGACAG
ACATTTTCATGGTACTCCATAAGCACAAGGCCGAGGTTTTGGGTGCAAAT
GTTGCGGTTAATCATAGGCAATTAACATTAACTGTGACAGCAGTTGTCAA
TGGGAACAGAGACAGAACGATTGAGAAGATTAAGGGAGACATACTGATTT
TATAG
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protein sequence of Tc04v2_p022830.1

>Tc04v2_p022830.1 ID=Tc04v2_p022830.1|Name=Tc04v2_p022830.1|organism=Theobroma cacao|type=polypeptide|length=235bp
MQKQRKKERERKMEDQQNWKGEEEEESEINELLCSIMEGYNDKLIPPLSQ
FSPSRQAAAAIVEEKGSSSRERGRAKEAKEVTESLKKERDRREKMAENYD
LLQSMVPNLFPKATREMIVGETIAYIQSLEKEITRMEELKNSSESSKGKM
HLYSNRNSSIDVTVSSNVVFFGIQSMVRPRLVTDIFMVLHKHKAEVLGAN
VAVNHRQLTLTVTAVVNGNRDRTIEKIKGDILIL*
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