Tc04v2_t022590.1

Overview
NameTc04v2_t022590.1
Unique NameTc04v2_t022590.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1608
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productbifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
NoteBifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603419
GenbankXM_007035387.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g022590Tc04v2_g022590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p022590.1Tc04v2_p022590.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto245372auto245372Theobroma cacaoexon
exon-auto245373auto245373Theobroma cacaoexon
exon-auto245374auto245374Theobroma cacaoexon
exon-auto245375auto245375Theobroma cacaoexon
exon-auto245376auto245376Theobroma cacaoexon
exon-auto245377auto245377Theobroma cacaoexon
exon-auto245378auto245378Theobroma cacaoexon
exon-auto245379auto245379Theobroma cacaoexon
exon-auto245380auto245380Theobroma cacaoexon
exon-auto245381auto245381Theobroma cacaoexon
exon-auto245382auto245382Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto245383auto245383Theobroma cacaoCDS
CDS-auto245384auto245384Theobroma cacaoCDS
CDS-auto245385auto245385Theobroma cacaoCDS
CDS-auto245386auto245386Theobroma cacaoCDS
CDS-auto245387auto245387Theobroma cacaoCDS
CDS-auto245388auto245388Theobroma cacaoCDS
CDS-auto245389auto245389Theobroma cacaoCDS
CDS-auto245390auto245390Theobroma cacaoCDS
CDS-auto245391auto245391Theobroma cacaoCDS
CDS-auto245392auto245392Theobroma cacaoCDS
CDS-auto245393auto245393Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t022590.1 ID=Tc04v2_t022590.1|Name=Tc04v2_t022590.1|organism=Theobroma cacao|type=mRNA|length=1608bp
ATGGACACTCTCAACCCTCTGCTTGTTTCATCTTCTGCTGGTTTGAATAT
GGAAAGTAGAGGAGGCGTGTGGAAGAATCCCACACTGATATGTGTTCCGA
TAATGGCTGATTCTATCGCTAAGATGGTCGTTGACATGGCCAAAGCTAAA
GCTAGTTCTGCTGATCTTGTGGAAATTAGATTGGATACTTTAAACAGTTT
CAATCCTTATGAGGACCTCAAAGTTTTAATCAAAGAGTGCCCTTTGCCTA
CACTGTTCACCTACAGACCAGTATGGGAAGGTGGTCAATATGATGGTGAT
GAGAAAGAGCGATTAGATGTGCTTAGATTAGCCATGGAGCTGGGGGCTGA
TTACATTGATGTTGAGCTTAAGGTTGCCCATGACTTCATGAAATCCATTG
ATGGAAAGAAGCCTGAAAAATTGAAAGTTATAGTGTCTTCTCACAACTAT
CAAAGCACTCCATCTGTTGAGGAGCTTGGCAACCTTGTCGCAAGAATACA
ATCAACTAGAGCTGATATAGTGAAGATAGTAACAACCGCCTTGGAGATCA
CTGATGTGGCACGCATTTTTCAGATAACAGTGCATTCTCAGGTTCCCATA
ATTGGACTTGTTATGGGCGAGAGGGGGTTGATTTCACGGATTCTTTGTGC
AAAATTTGGTGGCTATCTTACTTTTGGGACACTTGAGGCAGGAGTTGTTT
CAGCTCCTGGTCAACCAACAATTAATGATCTTTTGAATCTATACAATTTC
AGGCAGTTAGGTCCAGATACTAAAGTGTATGGAGTTATAGGGAAGCCTGT
TGGTCACAGCAAGTCACCTATGCTGTACAATGAAGCGTTCAAATCAGCTG
GTTTCAATGGTGTCTATGTCCACTTGTTAGTGGATGACTTATCAACATTT
CTCCAGAGTTACTCGTCCACTGATTTTGCTGGATTCAGCTGTACAATTCC
TCACAAGGAGGCTGCAGTGAAGTGCTGTGATGAGGTAGACCCAATTGCTA
AGTCCATAGGAGCTGTTAATTGCATTATAAGGCGACAAAGTGATGGGAAG
TTATTTGGTTACAATACAGACTATGTTGGTGCTATTTCTGCCATTGAGGA
TGGACTACCAGCTAGATTAAACACAAGCAATACTGCTGGTTCACCCTTAG
CTGGTAAGCGGTTTGTAGTTATTGGTGCTGGTGGTGCTGGCAAGGCACTT
GCTTATGGTGCAAAACAAAAAGGAGCGAGAGTTGTCATTGCCAATCGCAC
CTATGAACGAGCCAGAGAGCTTGCAGACATAATTGGAGGAGATGCTCTGT
CTCTTGCTGATTTAGCTTGTTTCCACCCGGAGGAGGGCATGATTCTTGCC
AATACAACTTCTATCGGCATGCAACCAAATATTGATGATACACCAATTCC
CAAGGATGCTTTGAAATATTATTCACTGGTTTTCGATGCCATCTACACGC
CTAAAATAACCAGACTCTTGAGAGAAGCTGAGGAATCTGGAGCCACGATT
GTCTCCGGGCTGGAGATGTTCATCGGCCAGGCATACGAACAGTTTGAGCA
GTTCACTGGGTTGCCAGCGCCAAAGGAGCTGTTTCGGAAAACTGTGTCAA
AGATTTAG
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protein sequence of Tc04v2_p022590.1

>Tc04v2_p022590.1 ID=Tc04v2_p022590.1|Name=Tc04v2_p022590.1|organism=Theobroma cacao|type=polypeptide|length=536bp
MDTLNPLLVSSSAGLNMESRGGVWKNPTLICVPIMADSIAKMVVDMAKAK
ASSADLVEIRLDTLNSFNPYEDLKVLIKECPLPTLFTYRPVWEGGQYDGD
EKERLDVLRLAMELGADYIDVELKVAHDFMKSIDGKKPEKLKVIVSSHNY
QSTPSVEELGNLVARIQSTRADIVKIVTTALEITDVARIFQITVHSQVPI
IGLVMGERGLISRILCAKFGGYLTFGTLEAGVVSAPGQPTINDLLNLYNF
RQLGPDTKVYGVIGKPVGHSKSPMLYNEAFKSAGFNGVYVHLLVDDLSTF
LQSYSSTDFAGFSCTIPHKEAAVKCCDEVDPIAKSIGAVNCIIRRQSDGK
LFGYNTDYVGAISAIEDGLPARLNTSNTAGSPLAGKRFVVIGAGGAGKAL
AYGAKQKGARVVIANRTYERARELADIIGGDALSLADLACFHPEEGMILA
NTTSIGMQPNIDDTPIPKDALKYYSLVFDAIYTPKITRLLREAEESGATI
VSGLEMFIGQAYEQFEQFTGLPAPKELFRKTVSKI*
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