Tc04v2_t022290.2

Overview
NameTc04v2_t022290.2
Unique NameTc04v2_t022290.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2634
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productpyruvate, phosphate dikinase, chloroplastic, transcript variant X2
NotePyruvate, phosphate dikinase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603389
GenbankXM_018119548.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g022290Tc04v2_g022290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p022290.2Tc04v2_p022290.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto244718auto244718Theobroma cacaoexon
exon-auto244719auto244719Theobroma cacaoexon
exon-auto244720auto244720Theobroma cacaoexon
exon-auto244721auto244721Theobroma cacaoexon
exon-auto244722auto244722Theobroma cacaoexon
exon-auto244723auto244723Theobroma cacaoexon
exon-auto244724auto244724Theobroma cacaoexon
exon-auto244725auto244725Theobroma cacaoexon
exon-auto244726auto244726Theobroma cacaoexon
exon-auto244727auto244727Theobroma cacaoexon
exon-auto244728auto244728Theobroma cacaoexon
exon-auto244729auto244729Theobroma cacaoexon
exon-auto244730auto244730Theobroma cacaoexon
exon-auto244731auto244731Theobroma cacaoexon
exon-auto244732auto244732Theobroma cacaoexon
exon-auto244733auto244733Theobroma cacaoexon
exon-auto244734auto244734Theobroma cacaoexon
exon-auto244735auto244735Theobroma cacaoexon
exon-auto244736auto244736Theobroma cacaoexon
exon-auto244737auto244737Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto244738auto244738Theobroma cacaoCDS
CDS-auto244739auto244739Theobroma cacaoCDS
CDS-auto244740auto244740Theobroma cacaoCDS
CDS-auto244741auto244741Theobroma cacaoCDS
CDS-auto244742auto244742Theobroma cacaoCDS
CDS-auto244743auto244743Theobroma cacaoCDS
CDS-auto244744auto244744Theobroma cacaoCDS
CDS-auto244745auto244745Theobroma cacaoCDS
CDS-auto244746auto244746Theobroma cacaoCDS
CDS-auto244747auto244747Theobroma cacaoCDS
CDS-auto244748auto244748Theobroma cacaoCDS
CDS-auto244749auto244749Theobroma cacaoCDS
CDS-auto244750auto244750Theobroma cacaoCDS
CDS-auto244751auto244751Theobroma cacaoCDS
CDS-auto244752auto244752Theobroma cacaoCDS
CDS-auto244753auto244753Theobroma cacaoCDS
CDS-auto244754auto244754Theobroma cacaoCDS
CDS-auto244755auto244755Theobroma cacaoCDS
CDS-auto244756auto244756Theobroma cacaoCDS
CDS-auto244757auto244757Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t022290.2 ID=Tc04v2_t022290.2|Name=Tc04v2_t022290.2|organism=Theobroma cacao|type=mRNA|length=2634bp
ATGGTGATCGGGCGGCGGGTGTTCACCTTTGGCAAAGGAAGGAGTGAAGG
CAACAAGGGCATGAAGTCCTTGTTGGGGGGCAAGGGAGCAAACCTGGCAG
AGATGGCCAGCATTGGATTATCAGTGCCCTCTGGGTTCACCATATCAACT
GAAGCATGCCAGGAGTATCAGCAGAATGCCAAGAGACTACCAGAGGGACT
ATGGGAAGAGATACTGGAAGGCTTGAAAACTGTGGAGGAGGACATGGGAG
CTTTTCTTGGTGACCCTTCCAAGCCACTTCTCCTTTCTGTCCGCTCTGGT
GCAGCGATTTCAATGCCTGGCATGATGGACACTGTCCTGAATCTTGGACT
AAATGACAATATGGTTGCTGGTTTGGCTGCAAAAAGTGGAGAGCGCTTTG
CTTATGATTCTTATCGACGATTCCTAGACATGTTTGGGGATGTTGTTATG
GGCATTCCACACTCCTCATTTGAGGAGAAGATAGCAAGGATGAAGCAACT
GAGAGGGGTTGAGCTTGACACTGAGCTAACTGAATCTGATCTTAAGGAGC
TGGTGGAGCAGTACAAGAATGTATATCTCACAGTCAAGGGTGAAGAGTTT
CCTTCGGATCCAAAGAAGCAGTTACAGTTGGCTGTTAAAGCAGTTTTCAA
TTCTTGGGATAGCCCAAGGGCCATTAAATATCGGAGCATTAACAAAATAA
GTGGGTTGAAAGGAACAGCAGTAAACATCCAATGCATGGTGTTTGGAAAC
ATGGGAGACACTTCAGGGACAGGTGTTCTGTTCACTAGGAATCCAAGCAC
TGGTGAAAAGAAGCTTTATGGGGAATTTTTAGTCAATGCACAGGGAGAGG
ATGTGGTTTCCGGAAACAGAACCCCAGAAGACTTGGATACCATGAAAAGT
CACATGCCTGAACCTTACAAAGAACTTGTTATGAACTGCAAAATTCTTGA
GCAACATTACAAAGATATGATGGATATTGAATTCACGGTACAAGAAAATA
GGTTATGGATGTTACAATGTCGATCAGGGAAGCGTACTGGAAAAGGTGCA
GTGAAGATAGCTGTAGACATGGTTAATGAAGGGCTTGTTGACACTCGAAC
TGCAATTAAGATGGTAGAGCCGCGTCATCTTGACCAACTTCTTCATCCTT
GGTTCGAAGATCCATCTTCTTACAAAGACAAGGTGGTTGCTGTGGGCTTG
CCTGCTTCTCCTGGAGCAGCAGTAGGGCAGATTGTGTTCAATGCTGAGGA
TGCGGAAGAATGGGATGCTGAAGGAAAGAGTGTCATCTTGGTAAGGACAG
AGACCAGCGCAGAGGATGTTGGAGGCATGCATGCAGCTGCTGGTATCTTG
ACAGCTAGAGGTGGCATGACATCTCACGCAGCTGTTGTAGCACGTGGATG
GGGAAAGTGCTGTGTTGCTGGCTGTTCTGATATACAAGTAAATGACATTG
AGAAGGTTCTTGTGATCGGGAAAATGATGCTTAAAGAAGGAGAATGGCTC
TCTGTCAACGGGGCAACGGGTGAAGTGATCCTGGGAAAACAGCCTCTCTC
TCCTCCGGTATTAAGTGTTGATTTGGAAACATTTATGTCATGGGCTGATG
AAATTAGGCACCTTAAGGTTATGGCAAATGTTGATACGCCTGAAGATGCA
CTGACTGCAAGAAAGAATGGTGCCCAGGGGATTGGTCTTTGTAGGACAGA
ACATATGTTTTTCGCTTCAGAGGAGAGGATAAAGGCTGTGAGAATGATGA
TCATGGCAGTAACACCTAAACAGAGGGAAGCAGAACTAGAGCTGTTGCTT
CCTTATCAAAGATCTGATTTTGAGGGAATTTTCAAGGCAATGGATGGCCT
TCCTGTAACAATCCGATTGCTGGACCCTCCACTTCATGAGTTTCTTTCCA
AGGGTGATGCAGAACAGATAGTATACGAATTAGCTTCAGAGACTGGCTTG
AGCAAAGAAGAAGTTCTCTCAAAAATCGAGAAGCTATCAGAAGTTAATCC
CATGCTTGGTTTGAGGGGCTGCAGGTTAGGAATATCCTCTCCTGAGCTTA
CTCAGATGCAAGTGCGGGCAATCTTTCAGGCTGCTGTCTCAGTAAGCAAC
CAAGGAGTTAAAGTACTTCCTGAGATAATGGTCCCACTAGTAGGAGCACC
AGAGGAACTAGGACACCAAGTCTGTTTAATCCACAGTGTTGCAAACGAAG
TCTTCTCTGAGATGGGTTTTTCCATAAGCTATAAAGTTGGGACAATGATT
GAGATCCCCAGAGCTGCCCTGGTTGCTGATGAAATTGCCATGGAAGCAGA
ATTCTTCTCCTTTGGAACCAATGATCTGACACAAATGACGTTTGGGTTTT
CTCGAGATGATGTAGGCAAATTTCTTCCTTTGTACTTATCAGAAGGCATC
TTACAAAGTGATCCATTTGAGGTACTCGATCGGAAAGGTGTAGGCCAACT
TATTAAGATTGCAGTGGAGAAAGGACGGCAAGCCAGGCCTGGCCTAGAGG
TTGGAATATGCGGGGAACATGGTGGGGAGCCTTCTTCCATTGCATTCTTT
GCAGAGGCTGGATTTGACTATGTTTCATGTTCGCCATTCAGGGTTCCCAT
TGCAAGGCTAGCAGCAGCTCAAGTTGCTCTCTGA
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protein sequence of Tc04v2_p022290.2

>Tc04v2_p022290.2 ID=Tc04v2_p022290.2|Name=Tc04v2_p022290.2|organism=Theobroma cacao|type=polypeptide|length=878bp
MVIGRRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPSGFTIST
EACQEYQQNAKRLPEGLWEEILEGLKTVEEDMGAFLGDPSKPLLLSVRSG
AAISMPGMMDTVLNLGLNDNMVAGLAAKSGERFAYDSYRRFLDMFGDVVM
GIPHSSFEEKIARMKQLRGVELDTELTESDLKELVEQYKNVYLTVKGEEF
PSDPKKQLQLAVKAVFNSWDSPRAIKYRSINKISGLKGTAVNIQCMVFGN
MGDTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVSGNRTPEDLDTMKS
HMPEPYKELVMNCKILEQHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGA
VKIAVDMVNEGLVDTRTAIKMVEPRHLDQLLHPWFEDPSSYKDKVVAVGL
PASPGAAVGQIVFNAEDAEEWDAEGKSVILVRTETSAEDVGGMHAAAGIL
TARGGMTSHAAVVARGWGKCCVAGCSDIQVNDIEKVLVIGKMMLKEGEWL
SVNGATGEVILGKQPLSPPVLSVDLETFMSWADEIRHLKVMANVDTPEDA
LTARKNGAQGIGLCRTEHMFFASEERIKAVRMMIMAVTPKQREAELELLL
PYQRSDFEGIFKAMDGLPVTIRLLDPPLHEFLSKGDAEQIVYELASETGL
SKEEVLSKIEKLSEVNPMLGLRGCRLGISSPELTQMQVRAIFQAAVSVSN
QGVKVLPEIMVPLVGAPEELGHQVCLIHSVANEVFSEMGFSISYKVGTMI
EIPRAALVADEIAMEAEFFSFGTNDLTQMTFGFSRDDVGKFLPLYLSEGI
LQSDPFEVLDRKGVGQLIKIAVEKGRQARPGLEVGICGEHGGEPSSIAFF
AEAGFDYVSCSPFRVPIARLAAAQVAL*
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