Tc04v2_t022280.1

Overview
NameTc04v2_t022280.1
Unique NameTc04v2_t022280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2916
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productpyruvate, phosphate dikinase, chloroplastic, transcript variant X2
NotePyruvate, phosphate dikinase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603387
GenbankXM_007035329.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g022280Tc04v2_g022280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p022280.1Tc04v2_p022280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto244568auto244568Theobroma cacaoexon
exon-auto244569auto244569Theobroma cacaoexon
exon-auto244570auto244570Theobroma cacaoexon
exon-auto244571auto244571Theobroma cacaoexon
exon-auto244572auto244572Theobroma cacaoexon
exon-auto244573auto244573Theobroma cacaoexon
exon-auto244574auto244574Theobroma cacaoexon
exon-auto244575auto244575Theobroma cacaoexon
exon-auto244576auto244576Theobroma cacaoexon
exon-auto244577auto244577Theobroma cacaoexon
exon-auto244578auto244578Theobroma cacaoexon
exon-auto244579auto244579Theobroma cacaoexon
exon-auto244580auto244580Theobroma cacaoexon
exon-auto244581auto244581Theobroma cacaoexon
exon-auto244582auto244582Theobroma cacaoexon
exon-auto244583auto244583Theobroma cacaoexon
exon-auto244584auto244584Theobroma cacaoexon
exon-auto244585auto244585Theobroma cacaoexon
exon-auto244586auto244586Theobroma cacaoexon
exon-auto244587auto244587Theobroma cacaoexon
exon-auto244588auto244588Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto244589auto244589Theobroma cacaoCDS
CDS-auto244590auto244590Theobroma cacaoCDS
CDS-auto244591auto244591Theobroma cacaoCDS
CDS-auto244592auto244592Theobroma cacaoCDS
CDS-auto244593auto244593Theobroma cacaoCDS
CDS-auto244594auto244594Theobroma cacaoCDS
CDS-auto244595auto244595Theobroma cacaoCDS
CDS-auto244596auto244596Theobroma cacaoCDS
CDS-auto244597auto244597Theobroma cacaoCDS
CDS-auto244598auto244598Theobroma cacaoCDS
CDS-auto244599auto244599Theobroma cacaoCDS
CDS-auto244600auto244600Theobroma cacaoCDS
CDS-auto244601auto244601Theobroma cacaoCDS
CDS-auto244602auto244602Theobroma cacaoCDS
CDS-auto244603auto244603Theobroma cacaoCDS
CDS-auto244604auto244604Theobroma cacaoCDS
CDS-auto244605auto244605Theobroma cacaoCDS
CDS-auto244606auto244606Theobroma cacaoCDS
CDS-auto244607auto244607Theobroma cacaoCDS
CDS-auto244608auto244608Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t022280.1 ID=Tc04v2_t022280.1|Name=Tc04v2_t022280.1|organism=Theobroma cacao|type=mRNA|length=2916bp
ATGTCTTCGGCTATGAAAGGAATAGTTATAAGGAGTACGGCAGATGTATG
TAAGCAGGGGCTATTCAAGGGAAAGTACACGGATCATCATCATTTCTTTG
ATCTCGTTAGAGAGAACCGTTCATTTCTTGGTGCGAGGCCAAGGTGTGTC
CGTCGTCTTGGAGTTGCTCGTTGCGTCACCGAAGAATATCCCCGTAGTAA
CGGAAAGAAGTTGTCGAGTTCGAAACAGAGGAAGGTTGAGACGGTGGCGG
AAGCCATACTTACGCCGGTGTCTGATCCAACACGGACTATGGAGAAGAGA
GTATTTACTTTTGGAAAAGGAAGGAGTGAAGGCCATAAGGGCATGAAGTC
CCTGTTAGGGGGGAAAGGAGCAAACCTGGCAGAGATGTCCAGCATTGGGT
TATCAGTTCCACCTGGACTTACCATATCAACAGAAGCATGCCAGGAGTAT
CAGCAGAATGGGAAGAAGCTACCAGAAGGCCTGTGGGAGGAGATATTGGA
AGGCTCGAAGAGTGTGGAAGAAGACATGGGTTGTATCCTTGGTGACCCGG
CAAAGCCACTTCTCCTCTCTGTTCGCTCTGGTGCTGCGATCTCGATGCCT
GGTATGATGGACACTGTCCTTAACCTTGGACTGAATGATGAAGTGGTTGC
TGGTTTGGCCGCAAAAAGTGGGGAGCGTTTCGCTTATGACTCTTATCGAC
GTTTCCTCGATATGTTTGGAGATGTGGTAATGGGTATTCCACACTCATTG
TTTGAGGAGAAGCTAGAGAAAATGAAGGAAGCAAAAGGAGCTACACTCGA
CACTGATCTAACAGCATCTGATCTCAAAGAGCTCGTAGAACAGTACAAGA
ATGTTTATGTAGAAGCCAAGGGTGAAAAGTTCCCTTCAGATCCAAAGAAG
CAGTTGTTGTTGTCCGTTAAGGCAGTTTTTGATTCTTGGGACAGCCCAAG
GGCCATGAAGTATAGAAGCATCAATCAGATAATTGGTTTAAAGGGAACAG
CAGTAAATATTCAAACCATGGTGTTTGGAAACATGGGAAATACTTCAGGG
ACGGGGGTTTTATTCACTAGAAATCCAAGCACTGGAGAAAAGAAACTCTA
TGGAGAATTCCTAGTAAATGCTCAGGGAGAGGATGTTGTTGCGGGAATTA
GAACACCAGAAGAATTGGACACAATGAAAAGTTACATGCCTGAGGCTTAC
AAAGAGCTTGTGCAGAACTGTGAGATTCTTGAGCGACATTACAAGGATAT
GATGGATATTGAGTTCACAGTTCAAGAAAATAGGTTATGGATGCTGCAAT
GTCGATCTGGAAAGCGTACTGGTAAAGGTGCAGTAAAGATAGCTGTAGAC
ATGGTTAATGAAGGACTTGTTGATAAACGTGCTGCAATTAAGATGGTGGA
ACCACAACATCTTGACCAGCTTCTTCATCCACAGTTTGAGGACCCTTCTG
CTTACAAAGACAAAGTGGTTGCCACGGGGTTACCTGCTTCTCCTGGAGCA
GCAGTGGGGCAGATTGTGTTCAGTGCTGATGATGCTGAAGAATGGCATGC
ACAAGGAAAGAGTCCCATCTTGGTAAGGACAGAAACCAGTCCGGAGGATG
TTGGAGGTATGCATGCGGCTGCTGGGATTTTGACAGCTAGAGGTGGAATG
ACATCTCATGCAGCTGTTGTAGCACGTGGATGGGGAAAGTGTTGTGTTTC
TGGCTGTTCAGATATTCGTGTGAATGATGCTGAGAAGGTTCTCACAGTTG
GAGACATGGTGATCAAAGAAGGAGAATGGTTTTCACTAAATGGTTCTACT
GGTGAAGTGATTCTAGGAAAACAGCCGCTAGCTCCTCCAGCATTAAGTCG
TGATTTAGAAACCTTTATGTCTTGGGCTGATGAAATTAGGCGCCTTAAGG
TAATGGCAAATGCTGACACACCTGAAGATGCACTAACAGCGAGAAATAAT
GGTGCTCAAGGGATTGGCCTTTGTAGGACAGAACACATGTTCTTTGCTTC
AGATGAGAGGATAAAGGCTGTCAGAAAGATGATAATGGCAGTAACACCAG
AACAGAGGAAAGCAGCTCTTAACCTCTTACTTCCTTATCAGAGATCTGAC
TTTGAGGGAATTTTCCGTGCAATGGATGGCCTTCCAGTAACTATCCGATT
GTTAGACCCTCCACTTCATGAATTTCTTCCCGAAGGTGACCTAGAACAGA
TAGTAAGTGAGTTAACTTCAGAGACCGGCACGACCGAAGATGAAGTTTTC
TCAAGAATTGAAAAGTTATCAGAAGTGAATCCCATGCTTGGTTTCCGTGG
CTGCAGGCTGGGGATATCGTATCCTGAACTAACTGAGATGCAGGCGCGTG
CAATCTTTCAGGCTGCTGTCTCAATGAGCAACCAAGGAGTTAAAGTTCTT
CCTGAGATAATGGTTCCCCTTGTTGGAACCCCTCAGGAACTTGGTCATCA
AGTCAGTTTAATACGGAGTATTGCAGAGAAAGTGTTCTCTGAGATGGGTT
CTTCCTTAAGCTATAAGGTGGGGACAATGATTGAAATCCCCAGAGCTGCC
TTAGTTGCTGATGAGATTGCAAAGGAAGCCGAATTCTTCTCCTTTGGAAC
CAACGATCTTACTCAAATGACATTTGGGTATAGCCGAGATGATGTTGGCA
AATTTCTTCCCATATACCTATCCAAAGGCATTCTTCAAAGCGATCCATTT
GAGGTACTTGATCAGAAAGGTGTTGGCCAACTCATCAAAATTGCCACAGA
AAAGGGTCGTGGAGCTAGGCCTAGCTTGAAGGTTGGAATTTGTGGAGAGC
ATGGAGGGGAGCCTTCTTCTGTTGCCTTCTTTGCAGAAGCTGGATTGGAC
TATGTTTCATGCTCTCCATTCAGGGTTCCAATTGCAAGGCTAGCAGCAGC
TCAAGTTGCCATCTGA
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protein sequence of Tc04v2_p022280.1

>Tc04v2_p022280.1 ID=Tc04v2_p022280.1|Name=Tc04v2_p022280.1|organism=Theobroma cacao|type=polypeptide|length=972bp
MSSAMKGIVIRSTADVCKQGLFKGKYTDHHHFFDLVRENRSFLGARPRCV
RRLGVARCVTEEYPRSNGKKLSSSKQRKVETVAEAILTPVSDPTRTMEKR
VFTFGKGRSEGHKGMKSLLGGKGANLAEMSSIGLSVPPGLTISTEACQEY
QQNGKKLPEGLWEEILEGSKSVEEDMGCILGDPAKPLLLSVRSGAAISMP
GMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGDVVMGIPHSL
FEEKLEKMKEAKGATLDTDLTASDLKELVEQYKNVYVEAKGEKFPSDPKK
QLLLSVKAVFDSWDSPRAMKYRSINQIIGLKGTAVNIQTMVFGNMGNTSG
TGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIRTPEELDTMKSYMPEAY
KELVQNCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVD
MVNEGLVDKRAAIKMVEPQHLDQLLHPQFEDPSAYKDKVVATGLPASPGA
AVGQIVFSADDAEEWHAQGKSPILVRTETSPEDVGGMHAAAGILTARGGM
TSHAAVVARGWGKCCVSGCSDIRVNDAEKVLTVGDMVIKEGEWFSLNGST
GEVILGKQPLAPPALSRDLETFMSWADEIRRLKVMANADTPEDALTARNN
GAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALNLLLPYQRSD
FEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVSELTSETGTTEDEVF
SRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAVSMSNQGVKVL
PEIMVPLVGTPQELGHQVSLIRSIAEKVFSEMGSSLSYKVGTMIEIPRAA
LVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLSKGILQSDPF
EVLDQKGVGQLIKIATEKGRGARPSLKVGICGEHGGEPSSVAFFAEAGLD
YVSCSPFRVPIARLAAAQVAI*
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