Tc04v2_t021730.3

Overview
NameTc04v2_t021730.3
Unique NameTc04v2_t021730.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1650
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productglutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial, transcript variant X2
NoteGlutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603327
GenbankXM_007035230.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g021730Tc04v2_g021730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p021730.3Tc04v2_p021730.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto243618auto243618Theobroma cacaoexon
exon-auto243619auto243619Theobroma cacaoexon
exon-auto243620auto243620Theobroma cacaoexon
exon-auto243621auto243621Theobroma cacaoexon
exon-auto243622auto243622Theobroma cacaoexon
exon-auto243623auto243623Theobroma cacaoexon
exon-auto243624auto243624Theobroma cacaoexon
exon-auto243625auto243625Theobroma cacaoexon
exon-auto243626auto243626Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto243627auto243627Theobroma cacaoCDS
CDS-auto243628auto243628Theobroma cacaoCDS
CDS-auto243629auto243629Theobroma cacaoCDS
CDS-auto243630auto243630Theobroma cacaoCDS
CDS-auto243631auto243631Theobroma cacaoCDS
CDS-auto243632auto243632Theobroma cacaoCDS
CDS-auto243633auto243633Theobroma cacaoCDS
CDS-auto243634auto243634Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t021730.3 ID=Tc04v2_t021730.3|Name=Tc04v2_t021730.3|organism=Theobroma cacao|type=mRNA|length=1650bp
ATGGCTTCCACACTGTTTAGAACTATTCAAATCCACCCGTTTTCGCTCTA
CCCAACTGCAATATGTAGGAGAAGGAACGGTGTTCTTTACTGCACAATGA
AAAGTACTCAAACTCAAACAGCAACACAAGAAAAGCAACAGCCTCCCAAA
GTCAAAGTCTCACAACATACCCAGAGCAAAACACTTGACAAGATTACAAG
AGACTATGAGGCAATAATTGGGATAGAGACACATGTCCAGCTCTCAACTC
TCACCAAGGCTTTTTGTAGTTGTCCTTACAATTATGGATCCCAACCAAAT
ACCAGTATCTGCCCCATTTGCATGGGATTGCCTGGTGCCTTGCCGGTTTT
AAATTCAAAAGTGATTGAATTCGCAGTGAAATTGGGTCTTGCACTCAATT
GCAAGCTATCTCTGAACTCAAAGTTTGATAGAAAGCAGTACTTCTATCCT
GACCTTCCAAAGGGTTACCAAATATCTCAGTTTGATATCCCAATTGCAAC
TGGTGGTTACATTGATTTGGATCTTCCTCTTGAGTTTGGTGGTGGTCATA
GGAAGTTTGGTATTACCAGAGTTCACATGGAGGAGGATGCAGGGAAGCTA
CTTCATTCTGGAAATGGAGATTATTCTCAGGTTGATCTAAATAGAGCAGG
GGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAACTGGGATTG
AAGCTGCTGAATATGCAGCAGAGTTACAGAGGGTGGTTCGATACTTGGGA
GTGAGTAATGGAAATATGCAAGAAGGCTCACTTCGCTGTGATGTAAATGT
ATCAATTCGACCAGTTGGGCAATCAGAGTTTGGGACAAAGGTTGAGATAA
AAAATTTGAACTCATTTTCATCAATTAACCGGGCCATTGATTTCGAGATA
TCAAGGCAGGCGCTTCTCCATACTCAAGGCCATGATGATCAAATTGTACA
GGAAACTCGTCTATGGGAAGAAGGTGCTCAGAAAACAGTTACAATGAGGA
AGAAGGAAGGACTTGCTGATTATCGTTATTTCCCAGAACCAGACCTCCCC
GAAGTTATTCTCACTCAGGAATATGTTGATGGCATCCGCAATTCTTTGCC
AGAACTTCCAGAAATGAAGCGTCGGAGGTATGAGAAGATGGGCCTAAGCA
TGCAGGATGTTCTTTTCCTGGCAAATGACGTAAATGTGGCAGAATACTTT
GATGCAACAATTTCAAGGGGTGCTGACATTAAGTTGGCTGCCAATTGGAT
AATGGGTGATATTGCTGCCTATATGAAAAATGAAAAGCTTTCTATTAATG
AGATCAAACTTATGCCAGAAGAGCTAGTAGAGCTGATAGCTTCCATTAAA
GGTGGGACTATCAGTGGAAAGATTGGAAAGGAGATATTGTTTGAGCTGCT
AGCCAAAGGTGGTACCGTCAAGGGACTGATAGAAGAGAAGGATCTGGTTC
AGATAGTAGATCCTGTTGAGATTGGGAAAATGGTAGATAAAGTGCTGTCA
GAAAACCCAAAGCAGCTAGAACAATATCGTGGTGGCAAAACTAAGCTACA
GGGTTTTTTTGCCGGTCAGGTAATGAAAATATCAAAAGGCAAAGCAAACC
CCGTCCTTTTGAACAAAATCCTTTTGGAGAAATTAAATGCCAAAAGCTGA
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protein sequence of Tc04v2_p021730.3

>Tc04v2_p021730.3 ID=Tc04v2_p021730.3|Name=Tc04v2_p021730.3|organism=Theobroma cacao|type=polypeptide|length=550bp
MASTLFRTIQIHPFSLYPTAICRRRNGVLYCTMKSTQTQTATQEKQQPPK
VKVSQHTQSKTLDKITRDYEAIIGIETHVQLSTLTKAFCSCPYNYGSQPN
TSICPICMGLPGALPVLNSKVIEFAVKLGLALNCKLSLNSKFDRKQYFYP
DLPKGYQISQFDIPIATGGYIDLDLPLEFGGGHRKFGITRVHMEEDAGKL
LHSGNGDYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYAAELQRVVRYLG
VSNGNMQEGSLRCDVNVSIRPVGQSEFGTKVEIKNLNSFSSINRAIDFEI
SRQALLHTQGHDDQIVQETRLWEEGAQKTVTMRKKEGLADYRYFPEPDLP
EVILTQEYVDGIRNSLPELPEMKRRRYEKMGLSMQDVLFLANDVNVAEYF
DATISRGADIKLAANWIMGDIAAYMKNEKLSINEIKLMPEELVELIASIK
GGTISGKIGKEILFELLAKGGTVKGLIEEKDLVQIVDPVEIGKMVDKVLS
ENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPVLLNKILLEKLNAKS*
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